Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57280 388 / 7e-137 RID2 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007484 [exp] 497 / 1e-179 AT5G57280 436 / 9e-156 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020005 [exp] 378 / 2e-133 AT5G57280 327 / 2e-113 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015533 [exp] 47 / 7e-06 AT5G57280 46 / 1e-06 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338700 [exp] 424 / 4e-151 AT5G57280 370 / 1e-129 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G049800 [exp] 419 / 8e-149 AT5G57280 355 / 5e-124 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0063 [flax] [poplar] PF12589 [flax] [poplar] WBS_methylT Methyltransferase involved in Williams-Beuren syndrome
Representative CDS sequence Show only first row Show all	>Lus10028960 pacid=23177284 polypeptide=Lus10028960 locus=Lus10028960.g ID=Lus10028960.BGIv1.0 annot-version=v1.0 ATGGCAACTCGCCCAGAGAATCTAGCGCCACCTGAAATTTTCTACAACGATTCCGAAGCTCGGAAGTACACTTCATCCTCCCGAATTATCAAAATTCAGT CGCAGCTTTCGGAGAGAGCATTGGAACTTCTGGCTTTGCCTGATGATGGCGTCCCTAGATTGCTTCTCGATATTGGCTGCGGATCAGGGCTTAGTGGGGA GACGTTAACTGAAAACGGCCATGAATGGATTGGCCTAGACATTTCAGAATCAATGCTTGATATTGCAGTGGAGCGAGAAGTCGATGGGGATCTTATGCTA CATGACATGGGTCAGGGCTTGCCATTTAGGCCTGGAACTATTGATGGTGCCATTAGCATCTCTGCCGTTCAGTGGCTATGCAATGCTGACAAATCATCTC ATGAGCCAAGGAAAAGACTGAAGGCTTTCTTTGGATCGTTGTACAGATGCTTATCAAGGGGTGCAAAAGCAGCGTTCCAAATGTATCCGGAGAGTGTATC CCAGCGGGAGCTGATTCTGAGAGCAGCGATGCAAGCTGGATTTGCTGGTGGAGTGGTTGTTGACTACCCACACAGTACCAAGAGCAGAAAGGAGTACTTG GTCCTCACTTGCGGACCGGCATCAGTTGACACAGCTGTTGCCAGAGCTAAAGGTATAGAAGGTGATAGCTGTTCTGAAGACGAAAGCGGTGATGAATATG ATGAAGAAAAGCAAACAGTTAGCATATCGGACAGACACAGACCGAAGAAAAGGCAGAAGACAGGGAAGAAAGGGAAAGGGAAGCAATGGATTCTGAAGAA GAAGGAGCAGATGAGGGGTAAAGGATTTGAAGTCCCGCCTGATACAAGATATACCGGCAGGAAGCGCAAGGCCAGGTTTTGA
AA sequence Show only first row Show all	>Lus10028960 pacid=23177284 polypeptide=Lus10028960 locus=Lus10028960.g ID=Lus10028960.BGIv1.0 annot-version=v1.0 MATRPENLAPPEIFYNDSEARKYTSSSRIIKIQSQLSERALELLALPDDGVPRLLLDIGCGSGLSGETLTENGHEWIGLDISESMLDIAVEREVDGDLML HDMGQGLPFRPGTIDGAISISAVQWLCNADKSSHEPRKRLKAFFGSLYRCLSRGAKAAFQMYPESVSQRELILRAAMQAGFAGGVVVDYPHSTKSRKEYL VLTCGPASVDTAVARAKGIEGDSCSEDESGDEYDEEKQTVSISDRHRPKKRQKTGKKGKGKQWILKKKEQMRGKGFEVPPDTRYTGRKRKARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	0	1
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	1.4	0.9491
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	2.0	0.9563
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	2.8	0.9265
AT2G04790			unknown protein		Lus10006402 [exp]	3.6	0.9192
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	4.0	0.9402
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	6.5	0.9412
AT5G57280		RID2	root initiation defective 2, S...		Lus10007484 [exp]	9.2	0.9188
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	10.5	0.9396
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	12.0	0.9349
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	12.4	0.9270

Compare expression of checked genes

Lus10028960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.