Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 64 / 5e-11 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G13200 64 / 7e-11 F-box and associated interaction domains-containing protein (.1) AT3G06240 57 / 9e-09 F-box family protein (.1) AT3G17480 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT3G17490 51 / 9e-07 F-box and associated interaction domains-containing protein (.1) AT4G21240 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT2G41473 44 / 8e-06 F-box family protein (.1) AT3G23260 46 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT3G17500 46 / 4e-05 F-box family protein (.1) AT4G04690 45 / 5e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007485 [exp] 274 / 9e-90 ND / Lus10023372 [exp] 251 / 9e-79 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10015408 [exp] 237 / 6e-73 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10013988 [exp] 159 / 3e-42 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023370 [exp] 148 / 2e-41 ND 37 / 0.008 Lus10024677 [exp] 137 / 8e-38 ND 42 / 2e-04 Lus10007486 [exp] 132 / 1e-37 AT2G41473 47 / 2e-07 F-box family protein (.1) Lus10001105 [exp] 132 / 4e-34 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10036360 [exp] 125 / 3e-33 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114900 [exp] 74 / 5e-14 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 65 / 2e-11 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.017G012200 [exp] 63 / 1e-10 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 59 / 4e-09 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 58 / 4e-09 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 58 / 6e-09 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318400 [exp] 56 / 2e-08 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G170300 [exp] 55 / 5e-08 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G129400 [exp] 54 / 1e-07 AT4G12560 100 / 3e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 54 / 1e-07 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028961 pacid=23177237 polypeptide=Lus10028961 locus=Lus10028961.g ID=Lus10028961.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGCGGAAAGAACAAGTCCGACCAAGAATTCCTCCAGAACGAAGATATACTGATAAGCATCCTCCTGAGGTTGCCGATCGCTCTGTACATCG CCCGACTCCGGTGCGTTTGCAGATCCTGGCGAAATCTGCTCTCCGATGTCAATTTCATTCGCGAAATACTCTTCTTCCAAAATCTCGCCGACCAGAAAGA CCTGCAGGTACTGATCACCGGCATGATAGAAGAGCCGGGGAGTCTTAGGTCGGGTACTATTCCCTACTCCTTACGCTCCTACGAAACCCTCAGTCCGATT GAAGGCGAATTTTCGAAATTACCCTTTATTGAGAGACCCATCCTCCGTTTCAATTTCGTGGCTTGCTGCGACGGCATTTTCTGTATGATTTCATTCCCCA ATGTTGTTCTATGGAATCCGACTACCTCTGAGACCAAGTTTCTGCCGCCATGCCCTCACCACCCTCGTCGAATTGGGTATGGCGGTTTCAGTTTCGATGA AGAGTTTGGGGGTTTTGGTTACGATCCGGTAACCGATGATTACAAAGTTGTATGGATGCTACATTGTGAGAAACGTTACGAACGTGGTGATTATGGTCCT CTGCCTGTTCTGCACACTGAGGTTTACAGCTTGAGGAATGATTCGTGGAAAAGAGTGGACCTGAATTGCGAGATGAGCTCTGGTATTCAGGGGTGTGGGA TACATCCCAATTATGTACATCAAGGACGACATACATCTCGAAATGAGAAATGTTATTGGTACTACGATAAGGTCCCCAAACTTTGTGGTATTCTTTCCTT CGACGTGAGCACCGAAGTGTTTGAACATGTCAGCTTCCCGTACCCACCTGCACTCCGCAACCATGATGTTGAGACGAGAGCTGGGAATCGAAGAATCAGA AAACATAGCTGTTGGTCTTCTGTGTCCTGCTTTATGTTGAAGGAGTCGTTTATCGTCACTTTTGGCCCCACAGATTACAAGAACGAGGTCGACCCTTATG AGATATGGGGACTGCTGAGGCACGGATTTGAGGAATCTTGGATAAAGTTGTTCACCTTCCAACCACCAGGAAGAAGCTTTGTCAATTACTTGGATATTTG GAAAGATACTACACTTCTTTGCTCACATGGAATGTATCGACTTACAACCGATGATCCTGCCGCAAAAGAAGTTGATGGAGTTTTCTGCCTTGATCTCTCT ACCGGTGAAATCGTCCGCAACCATCTCGAAATTCAAAGCACTGTTCAGCCTTTCTTGGCTCATATTTTTACCCCAACTCGAGTTTCGCTCTTTGAACTGA GTAGTCCTCACCAGCATTGA
AA sequence Show only first row Show all	>Lus10028961 pacid=23177237 polypeptide=Lus10028961 locus=Lus10028961.g ID=Lus10028961.BGIv1.0 annot-version=v1.0 MAAGGKNKSDQEFLQNEDILISILLRLPIALYIARLRCVCRSWRNLLSDVNFIREILFFQNLADQKDLQVLITGMIEEPGSLRSGTIPYSLRSYETLSPI EGEFSKLPFIERPILRFNFVACCDGIFCMISFPNVVLWNPTTSETKFLPPCPHHPRRIGYGGFSFDEEFGGFGYDPVTDDYKVVWMLHCEKRYERGDYGP LPVLHTEVYSLRNDSWKRVDLNCEMSSGIQGCGIHPNYVHQGRHTSRNEKCYWYYDKVPKLCGILSFDVSTEVFEHVSFPYPPALRNHDVETRAGNRRIR KHSCWSSVSCFMLKESFIVTFGPTDYKNEVDPYEIWGLLRHGFEESWIKLFTFQPPGRSFVNYLDIWKDTTLLCSHGMYRLTTDDPAAKEVDGVFCLDLS TGEIVRNHLEIQSTVQPFLAHIFTPTRVSLFELSSPHQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10028961 [exp]	0	1
AT5G26770			unknown protein		Lus10031444 [exp]	9.2	0.7868
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	11.6	0.7591
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	38.7	0.7457
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	57.5	0.7229
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	60.1	0.7268
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031041 [exp]	72.1	0.6983
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	90.7	0.6980
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	95.2	0.7194
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	109.0	0.7031
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	113.3	0.6794

Compare expression of checked genes

Lus10028961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.