Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57460 497 / 4e-172 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007487 [exp] 724 / 0 AT5G57460 885 / 0.0 unknown protein Lus10007798 [exp] 453 / 7e-155 AT5G57460 890 / 0.0 unknown protein Lus10004736 [exp] 330 / 2e-110 AT5G57460 538 / 0.0 unknown protein Lus10000167 [exp] 208 / 6e-65 AT5G57460 358 / 3e-121 unknown protein Lus10004737 [exp] 184 / 6e-57 AT5G57460 182 / 2e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168200 [exp] 459 / 4e-157 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028963 pacid=23177338 polypeptide=Lus10028963 locus=Lus10028963.g ID=Lus10028963.BGIv1.0 annot-version=v1.0 ATGGCCCTGGACATCGTCCTACGCGGAGTGAGCAGCATCCGATTGGCCGCAATGCTGGCCTCGATCCACGGGGAGAGCATCGCCAAGATGGTACACTCTG CGCTGGATACAGAGAGCAAGATCCGCGGCGGAGAGAGCTGGCTGGCCATGGAAGGTCACGCAATCGAGCGCGAAAGCAACGTGGCAGCTTTCTCCAACGC CGTGTTCGAGCTTCCGCCGGAGACCCTTGCCTCTGGAGATCACGTGGCGGCGAGCCTTGCACCTGTTGAGCAATTGGATAATAAAAAGGAAGAGAAAGAA GAAGAGAAAGAGGAAACGAAGGATCCTTTCGCTGCAAGTGAGGTGGTAAACAAACAGGAGGATTTAGCAGGTGAGTTCAAGAAGGATAAGAGCCAGTCTA AAGATCTGACATTAGCATTAGCCGGATTGGAAGTTACTGCATTGCCAAATGCAGAAGCTACTAAAGCTACGCATATTAATGTGGAAGGGTTTGAAGGGGA TTACGGTGGGATTGAGTTCAACAATGAACAAGCTTCATTGGGGGAGACGTTTGAAGGGTTTAGTGAAGCTTGGGGTGGTGGATTGGATGCTTCAGAGTTT GTGGGAACGAAGAAGATCCCAAAGCAGGAAGGACTCAGTGGATTGGAGTTGCTTCAAACAGGTGCTGATCCTGCCGTGGTTGTGAAATCTGCCGCTACTG GAGATAGTACGGGTACTCCTCTTGACAATCTTTTGGTACAGAAAACTGAGATGAAAGGTCCCGAAATGTACATAGTTGAGGAAGTGAGTGCAGAGTTTAG GGAGTCGCAGCTTGCTAGAGTTGGATTGATGGGTGTGGTTTATTTGAAGACATTGCCGATCGGGAGAGCCGGGGATAAAGAGACCGAGTTTTCGTTCCGT GTCGATAACACGAAAGCAGTGAAGAGGTTTGTTATGCATAATTCGAAAGTGCCGTTGAGTGATGTAACCTGTGTGTTGAAGTTGCCTGTCGATCCTACAT TGTTGACGGTGTCGCCCAAAGCTGCATTGAACAGGTCTCAGAAGGAGCTGAAATGGGTTGTGCCGGAGATCCCACTGAAGGGCTCTCCCGGTAAGTTGAG GGTGCGGATGCCAGTTGATATCAGTGAAGGAGAAGGTGATGAGGATATAGAGGCTGTTTGTTATATTAAATTCTCCATGGAAGGAGCTACTTCGCTATCG GAGATTTGCTTACGGCCTGCCTCGGAAGGGAACACCGACTTCCACGAGGTCGATCACAGGTACCAGAGTGGGGTTTATACTTGCAATTGA
AA sequence Show only first row Show all	>Lus10028963 pacid=23177338 polypeptide=Lus10028963 locus=Lus10028963.g ID=Lus10028963.BGIv1.0 annot-version=v1.0 MALDIVLRGVSSIRLAAMLASIHGESIAKMVHSALDTESKIRGGESWLAMEGHAIERESNVAAFSNAVFELPPETLASGDHVAASLAPVEQLDNKKEEKE EEKEETKDPFAASEVVNKQEDLAGEFKKDKSQSKDLTLALAGLEVTALPNAEATKATHINVEGFEGDYGGIEFNNEQASLGETFEGFSEAWGGGLDASEF VGTKKIPKQEGLSGLELLQTGADPAVVVKSAATGDSTGTPLDNLLVQKTEMKGPEMYIVEEVSAEFRESQLARVGLMGVVYLKTLPIGRAGDKETEFSFR VDNTKAVKRFVMHNSKVPLSDVTCVLKLPVDPTLLTVSPKAALNRSQKELKWVVPEIPLKGSPGKLRVRMPVDISEGEGDEDIEAVCYIKFSMEGATSLS EICLRPASEGNTDFHEVDHRYQSGVYTCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57460			unknown protein		Lus10028963 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	2.2	0.9458
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	3.7	0.9345
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	3.9	0.9279
AT4G01400			unknown protein		Lus10030195 [exp]	5.0	0.9257
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	5.3	0.9260
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	5.5	0.9246
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	6.0	0.9183
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	8.4	0.9164
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	8.7	0.8931
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	8.8	0.9159

Compare expression of checked genes

Lus10028963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.