Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43090 296 / 2e-101 Aconitase/3-isopropylmalate dehydratase protein (.1.2) AT3G58990 254 / 5e-85 IPMI1 isopropylmalate isomerase 1 (.1) AT2G43100 250 / 2e-83 ATLEUD1, IPMI2 isopropylmalate isomerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007488 [exp] 389 / 6e-138 AT2G43090 312 / 5e-108 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10007804 [exp] 209 / 9e-69 AT2G43090 205 / 6e-68 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10004742 [exp] 0 / 1 AT2G43100 155 / 6e-72 isopropylmalate isomerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107800 [exp] 290 / 3e-99 AT2G43090 291 / 1e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028964 pacid=23177108 polypeptide=Lus10028964 locus=Lus10028964.g ID=Lus10028964.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCTTGCTCATCCTCGCCGGCGACCTTCTTCGCGGCAACGGCCGCTTCTTCCTTCTCCGAAACGAAATCTTCCTTTTCTCCCTCCACTTTAC GACTTGTCAACTTCGTCTCCAACTTGGCTTCCATTTCTTCGAAGCGTCCGTTCATTGGAGGATCCCTCATATTGAAGGCGCCGATCGTCTGCACTCAGCG TGCTTCTTTGATCTCTCCTCGCGCTGGAGCGGAATCCTCGTCGACTGCCTCACCTGCCACATTTCACGGCCTCTGCTACGTAGTCGGCGACAACATCGAC ACCGACCAGATCATCCCAGCGGAGTACCTAACTCTCGTCCCTTCGAACCCTGCTGAGTACGAGAAGCTAGGCTCCTACGCCTTGGTCGGCCTTCCTGCGT CGTATGAGACGAGATTCATCGAGCCGAAGGAGACAAAGACGAAGTACGCGATCGTTATCGCGGGAGAGAATTTCGGATGCGGATCGTCTCGAGAGCATGC GCCTGTCGCATTGGGAGCTGCGGGAGTGGCGGCGGTGGTGGCGCAGTCGTACGCGAGGATCTTCTTCAGGAACTCTGTCGCGACAGGGGAAGTGTATCCT TTGGAGACGGAGGTTAGGGTTTGCGAGGAGTGCAGAACTGGGGATGAGTTGACGATTGAGCTGGAACAAAGCCGATTGATCAACCACACAACCGGGAAGG AGTACAAGTTGCTGCCCATTGGCGATGCCGGACCGGTGATTGACGCCGGAGGAATTTTTGCGTTTGCGAGGAAGGCTGGGATGATTCCCGCGCAGGCTGC TTGA
AA sequence Show only first row Show all	>Lus10028964 pacid=23177108 polypeptide=Lus10028964 locus=Lus10028964.g ID=Lus10028964.BGIv1.0 annot-version=v1.0 MAASCSSSPATFFAATAASSFSETKSSFSPSTLRLVNFVSNLASISSKRPFIGGSLILKAPIVCTQRASLISPRAGAESSSTASPATFHGLCYVVGDNID TDQIIPAEYLTLVPSNPAEYEKLGSYALVGLPASYETRFIEPKETKTKYAIVIAGENFGCGSSREHAPVALGAAGVAAVVAQSYARIFFRNSVATGEVYP LETEVRVCEECRTGDELTIELEQSRLINHTTGKEYKLLPIGDAGPVIDAGGIFAFARKAGMIPAQAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10028964 [exp]	0	1
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	2.8	0.8735
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	5.0	0.8627
AT1G33350			Pentatricopeptide repeat (PPR)...		Lus10027311 [exp]	8.9	0.8417
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	16.2	0.8506
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	20.4	0.8720
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	21.4	0.8517
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	35.7	0.8618
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	39.5	0.8422
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	40.2	0.8319
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	47.4	0.8492

Compare expression of checked genes

Lus10028964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.