Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 326 / 1e-114 Ribosomal protein L23/L15e family protein (.1) AT4G17390 325 / 3e-114 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000165 [exp] 430 / 5e-155 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10004743 [exp] 365 / 8e-130 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 365 / 8e-130 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 357 / 1e-126 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 350 / 1e-123 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 346 / 2e-122 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 346 / 2e-122 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 345 / 6e-122 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 342 / 9e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 342 / 9e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10028965 pacid=23177315 polypeptide=Lus10028965 locus=Lus10028965.g ID=Lus10028965.BGIv1.0 annot-version=v1.0 ATGGACGGCCCAGATCTTGTGTTTTCGGTTTATAAAAACGTCATTAGGGTTTTGCATTTCAGCTCACTGAAACTTCGTTCAAGCCGAAACCCTCCCGGTG AGAAGCTGCGAGCTGGTGCTTACAAATATGTGTCTGAGCTATGGAGGAAGAAGCAGTCGGATGTTATGCGGTTTATCCAGAGAGTGAGGTGCTGGGAGTA TCGTCAGCATCCGTCGATTGTTCGTGTTACTCATCCCACTCGTCCTGACAAGGCTAGGCGCTTGGGCTACAAGGCCAAGCAGGGATATGTTGTTTACCGT GTTCGTGTGAGACGTGGTGGAAGGAAGAGGCCAGTACCCAAGGGTATTGTGTACGGTAAGCCGACGAACCAGGGAGTTACTCAGCTGAAGTTCCAGAGAA GCAAGAGGTCTGTTGCGGAGGAGCGTGCTGGAAGGAAGCTGGCTGGTCTTAGGGTTCTGAATTCTTACTGGGTCAATGAGGATTCGACATACAAGTACTT TGAAGTGATCCTCGTCGATGTTGCACACAATGCCATCCGCAATGACCCGAGAATCAACTGGCTCTGCAACCCAGTCCACAAGCACAGGGAGCTCAGGGGT CTTACTTCTGCGGGAAAGAAGTACAGGGGACTTCGTGGAAAGGGGTCTCGCTACCACAAGAACAAGCCTTCTCGCAGGGGTACATGGAAGAGAAACAACA CCCTTTCCCTTCGTCGTTACCGTTAG
AA sequence Show only first row Show all	>Lus10028965 pacid=23177315 polypeptide=Lus10028965 locus=Lus10028965.g ID=Lus10028965.BGIv1.0 annot-version=v1.0 MDGPDLVFSVYKNVIRVLHFSSLKLRSSRNPPGEKLRAGAYKYVSELWRKKQSDVMRFIQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYR VRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLAGLRVLNSYWVNEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRG LTSAGKKYRGLRGKGSRYHKNKPSRRGTWKRNNTLSLRRYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	0	1
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	2.0	0.9752
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	3.5	0.9697
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	3.5	0.9742
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	3.9	0.9739
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	4.1	0.9426
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	5.9	0.9695
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	6.5	0.9612
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	8.0	0.9426
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	8.4	0.9599
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	8.7	0.9403

Compare expression of checked genes

Lus10028965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.