Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17380 413 / 3e-137 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24495 148 / 4e-38 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G25540 145 / 4e-37 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 143 / 1e-36 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G02070 136 / 3e-34 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G20475 104 / 1e-23 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 82 / 2e-16 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 81 / 6e-16 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 61 / 1e-09 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007489 [exp] 301 / 3e-95 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10000166 [exp] 247 / 3e-81 AT4G17380 182 / 9e-55 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10005743 [exp] 143 / 2e-36 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 142 / 2e-36 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10017724 [exp] 142 / 3e-36 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10032469 [exp] 142 / 5e-36 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10010010 [exp] 137 / 2e-34 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10027452 [exp] 132 / 2e-34 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10033095 [exp] 129 / 1e-31 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156200 [exp] 374 / 7e-122 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.006G156314 [exp] 144 / 1e-36 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.012G060000 [exp] 143 / 1e-36 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G159200 [exp] 143 / 1e-36 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 139 / 4e-35 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 128 / 2e-31 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.011G089500 [exp] 107 / 1e-24 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.008G191051 [exp] 89 / 9e-20 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 82 / 2e-16 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 76 / 2e-14 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Lus10028966 pacid=23177215 polypeptide=Lus10028966 locus=Lus10028966.g ID=Lus10028966.BGIv1.0 annot-version=v1.0 ATGAACATAGATGCAACTAGAACCAGGCTTCTACGAGCCAATCTGTTGCAGCCCTTAAAAGACATTGAAACGATCAACGCACGTCTTAATTGCGTGGATG AGCTAATAAGCAATGAACAGCTATTCTTTGGACTTACTCAGGTTCTCCGCAAGTTTCCTAAAGAGACTGGGTACTTTGTCACTTCTGCTTCAAGCCGACA AAAAGTAAAAAACGAGGTTATGGTCGTTGACAATGCCAGAAAAAGCCAAGTGTTGATTTCAAGCATTATTCTGCTTGAAACTACATTGGAAGCATTGCCT TTGCTTGGGAGGGTTCTGAAGGATGCAAACTGTGTTCTTCTTTCAAACATTTGCAGGACTGTCTGTGAGAATGATAAATACTCTACCATGAGGAAGAGAA TTGGCGAGGTTATTGATGAAGATGTACTCCATGCACGTGTACCTTTTATTGCCCGTACACAGCAATGTTTTGCTGTCAAAGCTGGAATCGACGGGCTTCT AGATATTGCGAGGAGAACATTCTGTGATACCAGTGAAGTGATACCAGTGTATATTGATACACTGTTCAACCTTAGAACTCTAGCTTCTCCCAACAATATC TTTATCTCGGAAGCATCAAACATGGTAACTGTAATGGGCCCAAACATGAGTGGAAAGAGCACATATCTTCAACAAGTATGTCTTATCGTCATTCTTGCTC AAATCGGCTGCTATGTTCCCGCTTGCTTTGCAACTATACGGGTAGTCGATCGTATATTTACAAGGATGGGATCAACAGATAGCTTGGAATCAAACTCCAG TACGTTCATGACAGAGATGAAAGAGACGGCTTTTATCATGCAGAACGTCTCCCAAAGAAGTCTGATTGTTATGGACGAACTTGGAAGAGCAACTTCATCC ACTGACGGATTTGCTATCACATGGAGCTGTTGCGAGCATCTGTTATCGCTCAAAGCGTTCACGATCTTTGCAACCCATATGGAGAACCTAGCGGAACTTG CAGTGCTCTATCCGAATGCGAAGATCCTTCACTTCGACGTCGATATACGAAACAACCGCTTGGATTTCAAGTTTCAACTCAAGGATGGACCAAGACGCAT TCCCCATTATGGACTTCTATTAGCCCAAGTTGCAGGACTACCGAGCTCAGTTATCGAAACTGCACGAAGCATCACATCAAACATCACACAAAAGGAAACA AATAGAATGGACGAGGACTGCGAAGAGCATCAGCAACTACATATGGCTTATCGGGTAGCCCAAAGGCTGTTATGCTTGAAATTTTCGAGCCAACATGAGG ATGCGATTCGACAAGCGCTGCAGAATCTCAAGGATAGCTATATGGATAGAACGCTCTGA
AA sequence Show only first row Show all	>Lus10028966 pacid=23177215 polypeptide=Lus10028966 locus=Lus10028966.g ID=Lus10028966.BGIv1.0 annot-version=v1.0 MNIDATRTRLLRANLLQPLKDIETINARLNCVDELISNEQLFFGLTQVLRKFPKETGYFVTSASSRQKVKNEVMVVDNARKSQVLISSIILLETTLEALP LLGRVLKDANCVLLSNICRTVCENDKYSTMRKRIGEVIDEDVLHARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSEVIPVYIDTLFNLRTLASPNNI FISEASNMVTVMGPNMSGKSTYLQQVCLIVILAQIGCYVPACFATIRVVDRIFTRMGSTDSLESNSSTFMTEMKETAFIMQNVSQRSLIVMDELGRATSS TDGFAITWSCCEHLLSLKAFTIFATHMENLAELAVLYPNAKILHFDVDIRNNRLDFKFQLKDGPRRIPHYGLLLAQVAGLPSSVIETARSITSNITQKET NRMDEDCEEHQQLHMAYRVAQRLLCLKFSSQHEDAIRQALQNLKDSYMDRTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	0	1
AT5G10420			MATE efflux family protein (.1...		Lus10015904 [exp]	1.4	0.8811
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002783 [exp]	4.2	0.8424
					Lus10039365 [exp]	6.8	0.8090
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	8.2	0.8609
					Lus10019211 [exp]	8.5	0.7974
					Lus10041093 [exp]	13.6	0.8440
AT5G06830			unknown protein		Lus10016277 [exp]	24.3	0.8467
AT1G55200			Protein kinase protein with ad...		Lus10036100 [exp]	26.1	0.8429
AT3G52640			Zn-dependent exopeptidases sup...		Lus10020806 [exp]	26.2	0.8084
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	32.9	0.8183

Compare expression of checked genes

Lus10028966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.