Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17370 576 / 0 Oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007490 [exp] 709 / 0 AT4G17370 590 / 0.0 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078500 [exp] 628 / 0 AT4G17370 605 / 0.0 Oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02894 [flax] [poplar] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10028967 pacid=23177295 polypeptide=Lus10028967 locus=Lus10028967.g ID=Lus10028967.BGIv1.0 annot-version=v1.0 ATGATGGGGAGAGAGCACCTCATTAATCTCCACCACCTTCGCTCCGGCCACAACGTCGCCGTGGTATGCATCGCCGATCCTCACCTCCCTTCCCAGCAGC AGGCGATCGACCTCGCACAGTCTTTCGGCTGGAACGATCTTCAGGTATTTTCCGGCCACCGGGAGTTGCTTGACAGCGGTCTCTGCGACGTCGTGGTTGT TTCCAGTCCAAACATGACTCACTTCCAGATTCTCATGGATATCATCGCACACCGCAAGGCACACCACGTGCTCGTCGAAAAGCCGCTCTGCACCACTGTT GCCCACTGCAAACAGGTGGTGCATGCTGCAAGGAAGAGGTCAGATATGCTGGTTCAGGTCGGACTGGAGTACCGGTACATGCCGCCTGTTGCGAAGCTGA TCGAGATCGTCAAGAGTGGATCTATAGGACATGTGAAGATGGTGGCCATCAGAGAGCATAGGTTTCCCTTTCTGGTTAAGGTTCATAACTGGAACAGGTT CAATATCAACACTGGGGGAACTCTGGTGGAGAAGTGTTGCCACTTCTTTGATCTGATGAAGCTGTTTGCCGGTGCCAATCCTGTTCGAGTCATGGCTTCC GGAGCTGTAGACGTTAACCACAAGGATGAAGTTTATGACGGGAAGGTACCTGATATCATTGACAATGCATATGTGATTGTCGAGTTTGACAACGGTTCGA GAGGAATGTTGGACCTTTGCATGTTTGCTGAAGGTAGCAAGAATGAGCAAGAAATATCCGTCGTGGGTAACATTGGAAAGGGAGAGGCTTTCGTGCCGGA GAGCATAGTGCGCGTTGGTGCTCGAGTTGCTGGTAGAGATGGCGTCGAGACCTTAAAAGCTGACGATGACAGAATAATATATGACGGGCTTCATCATGGA TCAAGCTACTTAGAACACCTCAACTTTCTGAGTGCAGTAAGAGCTGAAGGGGAAAAAGTTGCTGCGGTGGATTTGCAAGATGGACTGATTTCAGTAGCTA TTGGAGTAGCGGCACAGCGTTCCATCGAGGAGGGCCGGTTCGTAAGAATCGATGAAGTCTTGGAGGACGAAAGGATTTAG
AA sequence Show only first row Show all	>Lus10028967 pacid=23177295 polypeptide=Lus10028967 locus=Lus10028967.g ID=Lus10028967.BGIv1.0 annot-version=v1.0 MMGREHLINLHHLRSGHNVAVVCIADPHLPSQQQAIDLAQSFGWNDLQVFSGHRELLDSGLCDVVVVSSPNMTHFQILMDIIAHRKAHHVLVEKPLCTTV AHCKQVVHAARKRSDMLVQVGLEYRYMPPVAKLIEIVKSGSIGHVKMVAIREHRFPFLVKVHNWNRFNINTGGTLVEKCCHFFDLMKLFAGANPVRVMAS GAVDVNHKDEVYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSKNEQEISVVGNIGKGEAFVPESIVRVGARVAGRDGVETLKADDDRIIYDGLHHG SSYLEHLNFLSAVRAEGEKVAAVDLQDGLISVAIGVAAQRSIEEGRFVRIDEVLEDERI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	0	1
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	2.4	0.7616
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011287 [exp]	4.9	0.7334
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	4.9	0.7585
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	5.1	0.7631
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	5.3	0.7521
AT1G27990			unknown protein		Lus10037043 [exp]	7.4	0.7378
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	7.7	0.7535
AT3G23880			F-box and associated interacti...		Lus10027780 [exp]	8.5	0.7451
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	9.9	0.7310
AT5G67490			unknown protein		Lus10000389 [exp]	10.1	0.7588

Compare expression of checked genes

Lus10028967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.