Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24930 204 / 3e-66 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007492 [exp] 365 / 2e-129 AT4G24930 224 / 3e-74 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097700 [exp] 229 / 5e-76 AT4G24930 235 / 2e-78 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028969 pacid=23177141 polypeptide=Lus10028969 locus=Lus10028969.g ID=Lus10028969.BGIv1.0 annot-version=v1.0 ATGGAGCTGATTCGTTGGATTCCGCTTCCACATCCGGCACCGGCACCGGCACCTTCTTCATCCTCCTCCTCCAAATTTCCTCCACTCCACACCTCAATTC CCGCTCTTCGCCGCAAGAACAACCACATCATCCCATTCTCCGACCACCTCCTCTCCTTCGCCATTGCCCTCACACTCAACTCTCCTCTCCCCTCTTACGC AATCCCTTACCCAAACTCTCCCCCTCCTCCGATCTCCCCCACCACTCCCTTCTCCCAGTCCAAAACCCTCCAGATAGGCCTCGAAGACGGCAGGATCCGG CCCTGCCCGTCCACCAATCCCGGCTGCGTATCAACCAATCCCAAGTCGTCATCCTTCTCCTTCCCCTGGAGGATCCCCCACCCGGATGACGCTGCCGTGA TGGCGGAGGAATCCGCCGTCCGGAAATTGGAGGAGGCGATTTTGACAACACAGAAGAATCCTGAGATTCGAGTCGTGGAAAATTCCCCCAACGGAGGGAG GTATTTGGAGGCCGAGGTGGATGGGTTCTATGGCAAGAGGGATATTCTCGAGTTCTTGGTGAAAGGGGATGTGGTTACTTACAGATGTGTGGCTAAGAGT GTTACCTTTGTTTATCCGTTTACTACCGCCATTGGTGACTCTAAAGGACAGGTGGAGCGGCTCGGTCAGATCGTTAACCAACTCGGCTGGTTCGCTCTCA CCTTTGACTCCATGGGTTAG
AA sequence Show only first row Show all	>Lus10028969 pacid=23177141 polypeptide=Lus10028969 locus=Lus10028969.g ID=Lus10028969.BGIv1.0 annot-version=v1.0 MELIRWIPLPHPAPAPAPSSSSSSKFPPLHTSIPALRRKNNHIIPFSDHLLSFAIALTLNSPLPSYAIPYPNSPPPPISPTTPFSQSKTLQIGLEDGRIR PCPSTNPGCVSTNPKSSSFSFPWRIPHPDDAAVMAEESAVRKLEEAILTTQKNPEIRVVENSPNGGRYLEAEVDGFYGKRDILEFLVKGDVVTYRCVAKS VTFVYPFTTAIGDSKGQVERLGQIVNQLGWFALTFDSMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	0	1
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	1.0	0.9496
AT1G16080			unknown protein		Lus10041625 [exp]	4.2	0.9341
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	5.2	0.9422
AT5G42070			unknown protein		Lus10023063 [exp]	5.3	0.9431
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	6.0	0.9372
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	6.3	0.9204
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	6.9	0.9413
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	7.9	0.9086
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	8.5	0.9221
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	8.9	0.9379

Compare expression of checked genes

Lus10028969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.