Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07780 303 / 9e-104 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) AT5G05590 303 / 2e-103 PAI2 phosphoribosylanthranilate isomerase 2 (.1.2) AT1G29410 197 / 6e-63 PAI3 phosphoribosylanthranilate isomerase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007494 [exp] 414 / 2e-147 AT1G07780 342 / 3e-119 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145600 [exp] 312 / 6e-107 AT1G07780 332 / 7e-115 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Potri.008G069500 [exp] 308 / 2e-105 AT1G07780 340 / 3e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Potri.014G188400 [exp] 146 / 7e-44 AT5G05590 152 / 9e-47 phosphoribosylanthranilate isomerase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00697 [flax] [poplar] PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase
Representative CDS sequence Show only first row Show all	>Lus10028971 pacid=23177161 polypeptide=Lus10028971 locus=Lus10028971.g ID=Lus10028971.BGIv1.0 annot-version=v1.0 ATGTTGGTGGCTAGTGGCTCTGCAGGATTGTCCTCCATGGCAGGTGCAGGTATGACTGTCGAAAGACTGAACCTTGTGAAAACCAGGTGTTACTCAGGGA ACAGAATCACTAGCAGGGCTGCTTTATCAGAGAAAGCATCATTTTCTGTTGGGGGAGATGATGAGAAGAGTTCACCATTGGTGAAAATGTGCGGAATAAC ATCAGCTAGAGATGCTGCAATGGCTGCAGAAGCCGGAGCTGATTTAATCGGGATGATCCTGTGGCCTAACTCCAAACGTTCGATTTCATCTTCTGTTGCA AAAGAAATTTCGAAAGTCGCGAGGGAAAATGGAGCGCAACCTGTTGGTGTATTTGTTGACGACGATGCAGATACAATTATGAGAGCTGCAGACTTAGCTG ACCTTGAATTTGTACAGCTTCACGGGAATGGTTCAAGGGCGGCTTTCGGACAACTAGTACAAGACAGACGAATAATCTACGTTCTCCACGCAAACAACGA TGGCGAGCTTCTGAATCAAGTTTCGGAGGAAGACTGTTCTTTAGTCGATTGGATTCTCGTCGATAGTGCAACCGGGGGCAGTGGCAAAGGGTTTAACTGG GATCAGTTTCAGCTACCACCAATCCGAAGCAAGCACGGATGGCTCCTAGCTGGAGGGATCAACCCAGAGAACGTTTCTGAAGCTTTGACGATTCTGAAAC CTGACGGCATAGATGTTAGCAGCGGCATTTGTAGCTCGGATGGCATTAGCAAGGAGCAATCCAGGATATCTTCATTCATGAGTTCTTCAAGCAAGCATCT TGCGCAGCTTTTGGTTGACTCGTGTACTTCTCTAGAAGCTTCAAAGGGAAGTCTGCTGGAAAACATCGTATGA
AA sequence Show only first row Show all	>Lus10028971 pacid=23177161 polypeptide=Lus10028971 locus=Lus10028971.g ID=Lus10028971.BGIv1.0 annot-version=v1.0 MLVASGSAGLSSMAGAGMTVERLNLVKTRCYSGNRITSRAALSEKASFSVGGDDEKSSPLVKMCGITSARDAAMAAEAGADLIGMILWPNSKRSISSSVA KEISKVARENGAQPVGVFVDDDADTIMRAADLADLEFVQLHGNGSRAAFGQLVQDRRIIYVLHANNDGELLNQVSEEDCSLVDWILVDSATGGSGKGFNW DQFQLPPIRSKHGWLLAGGINPENVSEALTILKPDGIDVSSGICSSDGISKEQSRISSFMSSSSKHLAQLLVDSCTSLEASKGSLLENIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	0	1
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	2.8	0.8194
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	5.2	0.7844
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	5.6	0.8319
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	8.1	0.7927
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	9.8	0.7993
AT2G44870			unknown protein		Lus10020395 [exp]	10.2	0.7905
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	10.4	0.7981
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	10.4	0.7800
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	11.2	0.7966
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	12.4	0.7686

Compare expression of checked genes

Lus10028971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.