Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11150 153 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007495 [exp] 344 / 2e-118 AT3G11150 221 / 2e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069800 [exp] 187 / 1e-57 AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G047800 [exp] 40 / 0.0008 AT1G79760 103 / 1e-24 downstream target of AGL15-4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028972 pacid=23177249 polypeptide=Lus10028972 locus=Lus10028972.g ID=Lus10028972.BGIv1.0 annot-version=v1.0 ATGCACTTCCCCAGGAACTGGCCTCTCGGCTACGAGCCCGACGAAGACGGAAACAACGGTGGCCCGTCATTTTGGTTCGACTCGGCCGAAAACGATAATT CGTCGTTTTCGATCGAGTCGCTGAGGGAGCTGACTCGAGCGATGGAGGGGGTGGGGTCAGAGGTGATACGGATGCTTGCTCGGGCTGTCGGGTTCGAGAA CCCGACTGCCCGAGTTTGCTCCATGATGGTGGTGAGCGAGAGCGAAAGGGGTTCGGGTTCGGGTGGCGGGTTTTACCCGTATGTGGTGGCGTTGCAGTAC CAAATAAGGAGGCAGAAGCATTGCTTGCTGGGGGATTCCGAGTCCGGGTCGTGGGTAACGGTGCTGCCCGAGGTGGAGTCGGTTCTGGTGACCGTGGGCG ACATCGGGCAGGTGTGGAGCAATGGGAAGCTAAAGAAAGTGAGAGGGATGGGACTGGGGAGTTCAGAACAAGGAATCGACGACAGCAACAAAAGTTCATT GTCGTCATCATCATCGTCGTCAAGGAGAAGCATATCCATGAGATTGTTGATCACTCTTCCACTTGAAGACACAATCTCTCCACTGGTTTCTTCTAAGCTC ACAGAATCTGATGATGATGATGAAGAAGAAGAGTTGAAGTTCAGGTCATTTGGGATGGAGGATTATGCATGGAGAGTTTATCATGAGCCATTCATCTTCA AGGACCCACTTCACAGATATCGCTCTTCTCTTTGA
AA sequence Show only first row Show all	>Lus10028972 pacid=23177249 polypeptide=Lus10028972 locus=Lus10028972.g ID=Lus10028972.BGIv1.0 annot-version=v1.0 MHFPRNWPLGYEPDEDGNNGGPSFWFDSAENDNSSFSIESLRELTRAMEGVGSEVIRMLARAVGFENPTARVCSMMVVSESERGSGSGGGFYPYVVALQY QIRRQKHCLLGDSESGSWVTVLPEVESVLVTVGDIGQVWSNGKLKKVRGMGLGSSEQGIDDSNKSSLSSSSSSSRRSISMRLLITLPLEDTISPLVSSKL TESDDDDEEEELKFRSFGMEDYAWRVYHEPFIFKDPLHRYRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10028972 [exp]	0	1
					Lus10035642 [exp]	2.4	0.9060
AT3G11810			unknown protein		Lus10036797 [exp]	3.7	0.8965
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	3.9	0.8937
AT1G27300			unknown protein		Lus10015771 [exp]	5.5	0.8640
AT1G36980			unknown protein		Lus10037355 [exp]	6.0	0.8882
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	7.4	0.8926
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	9.2	0.8832
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	10.6	0.8784
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	11.2	0.8651
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	12.0	0.8750

Compare expression of checked genes

Lus10028972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.