Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 632 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 565 / 0 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 442 / 1e-153 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01360 362 / 7e-122 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 357 / 9e-120 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40320 338 / 1e-112 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT1G73140 333 / 4e-111 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 314 / 4e-103 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 298 / 2e-97 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 241 / 3e-75 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 841 / 0 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 646 / 0 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 370 / 3e-125 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 363 / 2e-122 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 343 / 3e-114 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 340 / 3e-113 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 327 / 3e-108 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 324 / 4e-107 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 317 / 1e-104 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069900 [exp] 676 / 0 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 655 / 0 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 548 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 503 / 6e-177 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 490 / 6e-172 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070200 [exp] 387 / 7e-132 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 385 / 5e-131 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G073300 [exp] 358 / 2e-120 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 347 / 5e-116 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 345 / 2e-115 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10028974 pacid=23177323 polypeptide=Lus10028974 locus=Lus10028974.g ID=Lus10028974.BGIv1.0 annot-version=v1.0 ATGCAGCCGGCTACGACAGTCCGGAGGAAATCCTACCAGCACCACTTCTCCACCCTCAAAACGGCGGCGATGAAGCACAGGATGAAGAGCAACAGCAACC TCTCTGTTTTTGTCGTCGTCTCCTCTGTTTTCCTCTTCGGAGTTTTCATGTACAACGAAGACGTCAAGTCAATCGCCGAGTTCCCCTTCTCCTGGCCCAC TTCTCTAGATCCTTCCGTCGAACTCGCTAAGGCAGCCGCCGAGTTCAACGCGATGGTACAAGCAGAGGAGGAACGGGACATGGCGGAGGTTGAACTCCCT CCTGAAGATTGCGATTTGTTCACTGGCAATTGGGTTCTGGATAATTCGACTCATCCGCTGTATAAAGAGGAAGAATGCGAGTTCTTGACTGCTCAGGTTA CTTGTATGAGGAACGGGAGGAAGGATTCGCTTTACCAGAACTGGAAATGGCAGCCCAGAGACTGTTCTTTGCCCAAGTTCAGGGCGAGACTGTTGCTGAA AAAGCTGAGGAACAAGCGGCTGATGTTTGTCGGGGACTCGTTGAATAGGAACCAGTGGGAGTCGATGATTTGCTTGGTGCAGTCTGTGATCCCTCCTGGG AGGAAAAGCTTGAACAAGACTGGTTCTTTGGCTGTTTTCAGAATTGAGGACTACAACGCAACGGTGGAGTTCTACTGGGCGCCGTTCCTGGTCGAGTCGA ACTCGGACGATCCTACGATGCACAGCATCTTGAACCGGATCATAATGCCGGAATCGATAGACAAGCATGGGCAGAATTGGAAGAACGTGGATTACCTCAT CTTCAACACCTACATTTGGTGGATGAACACCTTCTCCATGAAAGTCCTCCGGGGATCTTTCGATCAAGGAGCGACGGAGTACGACGAGGTCGACCGACCG GAAGCGTATCGGAGAGTGATGAATACATGGTCCAAGTGGGTTGATCAGAATGTGGATCCTAATCGGACCATGGTCTTCTTCAGCAGCATGTCCCCGCTTC ATATCAAGAGTGAGGATTGGGAGAATCCGAATGGGATAAAATGTGCGAAGGAAACGACACCGATTTTGAACCTATCGATGCCATTGGAGGTGGGGACGGA CCGGCGACTCTTCACCGTGGCATCGGATGTGACAACGGAGATGAAAGTGTCGGTCCACTTTATAAACATAACAAGACTGTCGGAGTACCGTAAGGATGCA CACACTTCAGTGTACACAATCCGGCAAGGGAAGATGCTGACGACGGAGCAAAAGGCGGATCCGGCAACATATGCTGACTGTATCCATTGGTGTCTTCCTG GATTGCCCGATACGTGGAACGAGTTCCTTTACACCCGGATCATTTCTCGCTTGTGA
AA sequence Show only first row Show all	>Lus10028974 pacid=23177323 polypeptide=Lus10028974 locus=Lus10028974.g ID=Lus10028974.BGIv1.0 annot-version=v1.0 MQPATTVRRKSYQHHFSTLKTAAMKHRMKSNSNLSVFVVVSSVFLFGVFMYNEDVKSIAEFPFSWPTSLDPSVELAKAAAEFNAMVQAEEERDMAEVELP PEDCDLFTGNWVLDNSTHPLYKEEECEFLTAQVTCMRNGRKDSLYQNWKWQPRDCSLPKFRARLLLKKLRNKRLMFVGDSLNRNQWESMICLVQSVIPPG RKSLNKTGSLAVFRIEDYNATVEFYWAPFLVESNSDDPTMHSILNRIIMPESIDKHGQNWKNVDYLIFNTYIWWMNTFSMKVLRGSFDQGATEYDEVDRP EAYRRVMNTWSKWVDQNVDPNRTMVFFSSMSPLHIKSEDWENPNGIKCAKETTPILNLSMPLEVGTDRRLFTVASDVTTEMKVSVHFINITRLSEYRKDA HTSVYTIRQGKMLTTEQKADPATYADCIHWCLPGLPDTWNEFLYTRIISRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	4.0	0.8795
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	4.6	0.8887
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	6.3	0.8916
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	10.9	0.8932
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10002498 [exp]	13.0	0.8717
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	15.5	0.8427
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	15.8	0.8588
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	17.0	0.8760
					Lus10024940 [exp]	17.5	0.8881
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	17.7	0.8764

Compare expression of checked genes

Lus10028974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.