Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05560 1779 / 0 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007498 [exp] 3417 / 0 AT5G05560 1873 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070300 [exp] 2451 / 0 AT5G05560 1847 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028975 pacid=23177216 polypeptide=Lus10028975 locus=Lus10028975.g ID=Lus10028975.BGIv1.0 annot-version=v1.0 ATGCCGGTTGCAGCTCGGGAGCTCACCGTGCTCGGCGAGTTCAAGCCATTTGGCTTGATCGCCGAAGCTCTCGACGGAGGCAAGCCCCAAGACGGCGGAG GCAGTGTCTCCGATAAGTACGACTACTTCCTCTTCGACGCAGATACCGTCCGAGATGGAAATGGAGCCGATGACTCTACCGCTTCTGCACTTAGCGATCA TTGCGACCACGAGCTGTTCATCAGGGGGAACAAGATCTTATGGTCTACGGGAGCAAGAGTTTTCAAGAGATTCACGCTTCCATCCGCAGTTGTCATGGCT TGCTGGTGTCGATTGGGGGAAGCATCTGAAGCATGCCTATATATATTAGAAGCTGATACTCTAACAGTATATAGTATATCTGGCGAAGTGGTCTATGTCC CTCTCCCTTGCGGAATCGCATCGATATGGCCCCTTCCATATGGTTTGTTACTTCAGGCAGCTTCTGAAGGAAGTCGGCCAACACATTCATCCCTCTCATC ATCGCATGATAGAATGTATCCAAAGAGAGACACAAGGGATTCTCCACAACAACGTTTCAGCGGTTACAGTCCATCTGTTTATGGTATCAACAATGAGGCA GTTACAATGTCCTCACATTTGATTCTGAAGGATCTGTTGGAAGAACCACAGCCAACTTGTGTAGAAGAGAGAGGAAAGTGGAACATTATGAAGGACCTCG AGGAGAGAACAATATGGACCAGCGACCTGGTTCCTTTGATGGCATCATATAATCGAGGACAATCGCAGCACTCTGTTTGGGTTGCTGAAATAATCAATGA TAATCTTGAGGTGGTAAATGGTAGCTCAACTGATGCAGTCCCTTATGCTCTGTCTGCTAAACAAGTCTCCTTTCGAAGAATCTGGCAGGGGAGAGGTACC CGAACAGCTGCTTGTAAGGTTTTTCTTGCTACTGATGATGATGCTAGCCCCATTATTTGTTTTCTTCTTCAAGAGCAAAAGAAACTGTTGTCTTTGAGAC TTCAAACAACTGAAATCAACAATGAGACTGTCTTTGATATTAAACCCGACATGAGCTGGAGTATTCCCGCGATAGCAGCTGCTCCTGTGGTGGTGACACG TCCAAGAGTGAAAGTGGGACTGCTACCATATTCTGACATTATTGCTTTGGCCCCTGACAACACTCTTTCTCTTTATTCAGGGCATCAATGTCTGTGCAGA TATTCACTACCTCCATGTTTGGGTAAACTTCATCTTTCTTCTCAGTCAGAGCTCTCAAATACCATTTCCGTTCACCATGATTCGAAAGTTTTAGGACTGG CTGATGCTGTGGAGGGCCGTTTCAATCTTATAGTAAACAATGGACAGATGTTTCGATGTGTTCTTCGGAGTAGCCTTTCATCTGAATTGGTGAATGATTG CATCACCGTAATGGCTGATGGACTCTGTCCTAGCTTGTACAAACATTTCCTTCTTCTTCTATGGGGTGATGGTGATTCTGACTATTCGATGAGTGGCAAG TCTAGTCTACACTCTGAATGGGATTCATTCTGTACCATCATACTCAGACTTTGCGGGGAATCTGGTTCTGTTAAGTGTGTTAAGCCACCACAAGCTTCAT CTTGGGAATTCCTTGTGAACAGCAACTTCCACAAGAATTATCGGAAAATTAGTGTAAGTGGTGGATTTTCCTGTGTGTCCCTTGATGTGGAAAAATTGCA CTCCCAGGGATCAATTGCGGAAGGAAAATGTAGTTTGCCGAACTCTACCTGTTTTGAGCTATTAAGGGAGACTTTGGGTTGCCTCCATGCACTCTATGAG ACTCTAAAATTGGATAGTCTACGACAAAGAGATTTGGAGCTTCTGGTGGTCCTATTATGCAACATTGCTGCATTTCTTGGACAAGAAGGTTATTTAGATC ATTATATCCGTGATTTTCCTGGTCTTGAAAAGCAAATCGAGAGACGTGGTACGTCTTCTTCTTGGACAACTCCTCCCAGTTTATTCAGATGGCTTGAACA GTGTTTGCAACATGGTTGTAAGTCAGCTAGTGCAAATGATCTTCCACCCCTGATTTGCAAAGATGGAAGTAATGTTGTGAGCTTGGCGCGAAAGATAGTT TCCTTCTACAGTTTGTTATGTGGTGGTGAACAGATGGGTAAGAAGGTATCTTCTGGAGTTTACTGTAACATTGCTTCGGGTTCATCCTGTTCCACTGAGG AGCTGACTGTCTTGGCAATGGTCGGTGAAAGGTTTGGATTACGACAACTTGACACACTGCCTTCTGGTGTATCTTTACCTCTGCGACATGCACTGAGCAC TTGCCGGGAATCTCCACCTACAGATTGGCCTGCACCTGCATATATTCTTCTGGGGAGAGAAGATTTGGCTTTGTCACGTTTGGTTCCCTCCCGCAAATCT AAGGATCTTGGAAGCCGATCTGACATGAATTTAATATCAATGTCAACGCCTTACATGCTACATTTACATCCAGTGACCGTTCCTTCTACTGTTACTGAAA CCGTGGGATTAGAAAGTTCCAAACTGGAAAATTCAACCTCTTCTGATGTGTCTGTGGCGGATGGGATGGAACATATCTTCTCTTCTAGCACTCAGTTACG TTATGGTCGTGATCTGCGATTGAATGAGGTAAGGCGTGTTCTATGCTCAGCTAGACCTGTCGCAATCCAAATATCTACATACCCCAATCCTTCGGACCAG GATATTCAACAGACTCAACTATGGCACCTTGCCCAACGAACCACTGCTCTTCCTCTTGGTCGCGGGGCATTCACTTTAGCAACCATATCTACCCTCTTAA CAGAGGAATTTGCTGTACCCAAGCTTGTTTTAGCAGGTCGGTTACCTGCCCAACAAAATGCAACTGTTAATCTAGATCCGAGTATCAGAAATATACAAGA GCTTAAATCATGGCCAGAGTTTCATAATGCTGTTGCTGCTGGACTACGGTTAGCCCCTCTCCAGGGTAAGGTGTCAAGAACATGGATAATGTACAACAAA CCGGAGGTACCAAATGTTGTCCATGCGGGACTTCTCCTTGCATTAGGTTTACATGGATATCTGCATGGGTTAACCATGTCAGACATATACAAGTATTTCA CACAGGAACATGAATGCACAACCATTGGACTATTGCTAGGGCTTGCAGCTTCCTATCGAGGAACCATGGAATCCTCTATATCAAAGTGTCTTTACTTTCA CATACCTGCTCGACAATCATCATCACTTGCGGAGTTGGAGTTACCTTCCCATCTTCAGTCAGCTGCTTTAGTATCAGTTGGATACCTCTTCGAGGGATCA GTGCACCCGCAAACAATGCAGATTCTCTTGGGTGAGATGGGTCGCAGAAGTTCTGGTGACAATGTACTTGAAAGGGAAGGTTATGCTGTAGCTGCTGGAT TCTCGTTGGTCCTAGTTGCCTTGGGTCGAGGAAATGATGCACTGGGTTTCGTGGACAGTTTGGTGGATAGGTTATTCCACTATATTGGTGGCAAAGAACT TAACCATCAGGAAAGACCATTATCATTCAATGCTTTGGCAGATGAGTCCAACTGTGGTGCTGGGCAGATGATAGATGGAACTGCAGTTAGTATTGATGTT ACTGCACCTGGAGCTATCATTGCCCTTGCTTTAATGTTTTTAAAGACTGAATCAGAGGCCATTGTGTCAAGATTGTCTATTCCAAAAACCCACTATGAAC TGCAGTATGTGAGGCCGGACTTCATAATGCTTCGTGTCATTGCCCGGAATTTAATAATGTGGAGCAGGGTGCAGCCATCCAAGGATTGGATTCTGAACCA GATTCCCGAGATAATAGCAACTGGTGTCAAAGGCCTTGTAGATGACACTAGCAATATCGATGAGATGGATGCTGAAACATTTGTACAGGCATATGTCAAT ATAGTGGCTGGGACGTGTATTTCTCTTGGATTGAGATTTGCGGGTACAAGGGATGGAAATGCACAGGAACTGCTCTATGAATGTGCTCTGTACTTTTTGA ATGAGATAAAATCTGTTTGTGCTGCAAAAGCTAACAGCTTTCCCAAGGGCTTGTCACGCTATGTTGATAGGAGCACACTGGAAATATGCCTTCACCTTGT TGTTCTTGCGTTGTCTGTGGTAATGGCTGGTTCTGGACATCTTCAAACATTTAGGTTGTTGAAGTTCCTTCGTGGCCGTAGCTCTCCAGATGGTCATACA AATTATGGCATTCAAATGGCTGTGAGCATGGCAATTGGGTTCTTGTTTCTTGGGGGAGGAATGCGCACATTTTCAACAAGCAATGGTGCCATTGCCGCTT TGCTGATTTCTCTATACCCACGGTTGCCTACTGGACCCAATGACAATCGTTGCCACCTTCAGGCATTCAGACATTTATACGTCCTTGCTACTGAAGCTCG TTGGGTTCAGACTGTAGATGTCGACAGTGGCTTGCCTGTTTATGTCCCCATTGAAGTCTCCATCGAGGAGACTGAAAATTATTCAGAAACCACTTACAGT GAGGTCACACCATGTATTTTGCCAGAGCGTTCTATTTTGAAGAAGGTGTGCATTTGTGGTCCTAGATACTGGTCACAAAAGATCGAGCTTGACCCTGAAG ATAAGCCTTGGTGGAGTTTCGGGGACAAGAATGACCCTTTTAATTCGGGTATTCTCTACGTAAAGCGGAAGGTGGGAGCTTGCTCGTATGTGGACGACCC CATTGGGCGGCAGTCTTTGCTGTCTCGAGCAATGCACAAGGTTTTTGGCTTGACTAGCGTCAAAGCATGGGCGGGCAGCAACAACCGGCATGGCTCTCTT ACTGTTGATCAGTTGGTCAGTACATTCTCTTCTGATCCTAGTTTGATCGCCTTCGCACAACTCTGCTGTGATGCTTCTTGGAATAGCAGGTCCGATGTTG ACTTCCAGGAGTTCTGCTTACAAGTACTCTTCGAGTGCATTAGCAGAGACAGACCAGCTCTTCTCCAGGTCTATTTGTCTTTATACACCACTCTAGCGTC CTTGGCCGAGCAAGTCAGCAACGGGACTCTCATTTTCAGAGACTCGCTTGCCGTTTCTAGTCTCAAGCTTGCACTCACGTACAACGAAGCCGTGGTGAGA GGGAAACTAACCACCGGGCAAGGCAGCATCGTCCAGTCGACCTTCCTAGGCTCCCTAAAGAAGAGAATGGAAGAGCTACTAAACCACTCAGATGAACTGA AAAACGATCTACGTACCTACTTGAGCTCAGGAAGATGGCCGAATGTCGAAAACAAATCCGTGCTGCTTTCATGGTATCTCCGGTGGTTCGGAGTGCCGTC GCTGTCGGTAATCAATGCTGCCACGGCGACGTTGAAACCCAGGGGGCTGCCGCTGTCGGTCCCGTTGTTTCGATTGTTGCTGCCCGGAACCGACGTCAGT GCAGTGAGCCGGATTGTTCAGCTGCTGTCTGTTCAAGAAGGTAGAATTTGA
AA sequence Show only first row Show all	>Lus10028975 pacid=23177216 polypeptide=Lus10028975 locus=Lus10028975.g ID=Lus10028975.BGIv1.0 annot-version=v1.0 MPVAARELTVLGEFKPFGLIAEALDGGKPQDGGGSVSDKYDYFLFDADTVRDGNGADDSTASALSDHCDHELFIRGNKILWSTGARVFKRFTLPSAVVMA CWCRLGEASEACLYILEADTLTVYSISGEVVYVPLPCGIASIWPLPYGLLLQAASEGSRPTHSSLSSSHDRMYPKRDTRDSPQQRFSGYSPSVYGINNEA VTMSSHLILKDLLEEPQPTCVEERGKWNIMKDLEERTIWTSDLVPLMASYNRGQSQHSVWVAEIINDNLEVVNGSSTDAVPYALSAKQVSFRRIWQGRGT RTAACKVFLATDDDASPIICFLLQEQKKLLSLRLQTTEINNETVFDIKPDMSWSIPAIAAAPVVVTRPRVKVGLLPYSDIIALAPDNTLSLYSGHQCLCR YSLPPCLGKLHLSSQSELSNTISVHHDSKVLGLADAVEGRFNLIVNNGQMFRCVLRSSLSSELVNDCITVMADGLCPSLYKHFLLLLWGDGDSDYSMSGK SSLHSEWDSFCTIILRLCGESGSVKCVKPPQASSWEFLVNSNFHKNYRKISVSGGFSCVSLDVEKLHSQGSIAEGKCSLPNSTCFELLRETLGCLHALYE TLKLDSLRQRDLELLVVLLCNIAAFLGQEGYLDHYIRDFPGLEKQIERRGTSSSWTTPPSLFRWLEQCLQHGCKSASANDLPPLICKDGSNVVSLARKIV SFYSLLCGGEQMGKKVSSGVYCNIASGSSCSTEELTVLAMVGERFGLRQLDTLPSGVSLPLRHALSTCRESPPTDWPAPAYILLGREDLALSRLVPSRKS KDLGSRSDMNLISMSTPYMLHLHPVTVPSTVTETVGLESSKLENSTSSDVSVADGMEHIFSSSTQLRYGRDLRLNEVRRVLCSARPVAIQISTYPNPSDQ DIQQTQLWHLAQRTTALPLGRGAFTLATISTLLTEEFAVPKLVLAGRLPAQQNATVNLDPSIRNIQELKSWPEFHNAVAAGLRLAPLQGKVSRTWIMYNK PEVPNVVHAGLLLALGLHGYLHGLTMSDIYKYFTQEHECTTIGLLLGLAASYRGTMESSISKCLYFHIPARQSSSLAELELPSHLQSAALVSVGYLFEGS VHPQTMQILLGEMGRRSSGDNVLEREGYAVAAGFSLVLVALGRGNDALGFVDSLVDRLFHYIGGKELNHQERPLSFNALADESNCGAGQMIDGTAVSIDV TAPGAIIALALMFLKTESEAIVSRLSIPKTHYELQYVRPDFIMLRVIARNLIMWSRVQPSKDWILNQIPEIIATGVKGLVDDTSNIDEMDAETFVQAYVN IVAGTCISLGLRFAGTRDGNAQELLYECALYFLNEIKSVCAAKANSFPKGLSRYVDRSTLEICLHLVVLALSVVMAGSGHLQTFRLLKFLRGRSSPDGHT NYGIQMAVSMAIGFLFLGGGMRTFSTSNGAIAALLISLYPRLPTGPNDNRCHLQAFRHLYVLATEARWVQTVDVDSGLPVYVPIEVSIEETENYSETTYS EVTPCILPERSILKKVCICGPRYWSQKIELDPEDKPWWSFGDKNDPFNSGILYVKRKVGACSYVDDPIGRQSLLSRAMHKVFGLTSVKAWAGSNNRHGSL TVDQLVSTFSSDPSLIAFAQLCCDASWNSRSDVDFQEFCLQVLFECISRDRPALLQVYLSLYTTLASLAEQVSNGTLIFRDSLAVSSLKLALTYNEAVVR GKLTTGQGSIVQSTFLGSLKKRMEELLNHSDELKNDLRTYLSSGRWPNVENKSVLLSWYLRWFGVPSLSVINAATATLKPRGLPLSVPLFRLLLPGTDVS AVSRIVQLLSVQEGRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	0	1
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	1.0	0.9645
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	1.4	0.9628
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	3.0	0.9571
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	3.6	0.9369
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	8.1	0.9177
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	8.6	0.9153
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	9.2	0.9410
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	9.5	0.9399
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	10.1	0.9103
AT5G48310			unknown protein		Lus10016071 [exp]	10.2	0.9481

Compare expression of checked genes

Lus10028975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.