Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08530 1203 / 0 Clathrin, heavy chain (.1) AT3G11130 1203 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030393 [exp] 2625 / 0 AT3G08530 1518 / 0.0 Clathrin, heavy chain (.1) Lus10037845 [exp] 2611 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 2518 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G186900 [exp] 1224 / 0 AT3G11130 3104 / 0.0 Clathrin, heavy chain (.1) Potri.008G070600 [exp] 1217 / 0 AT3G11130 3139 / 0.0 Clathrin, heavy chain (.1) Potri.009G073300 [exp] 1186 / 0 AT3G11130 3006 / 0.0 Clathrin, heavy chain (.1) Potri.001G278800 [exp] 1185 / 0 AT3G11130 2982 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01394 [flax] [poplar] Clathrin_propel Clathrin propeller repeat CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS CL0020 [flax] [poplar] TPR PF09268 [flax] [poplar] Clathrin-link Clathrin, heavy-chain linker
Representative CDS sequence Show only first row Show all	>Lus10028976 pacid=23177307 polypeptide=Lus10028976 locus=Lus10028976.g ID=Lus10028976.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTAACGCTCCGATCACCATGAAGGAAGTGCTGACGTTGCCTAGTATTGGGATCAGTCCGCAGTTCATCACCTTTACGAATGTCACCATGG AGTCGGAAAAGTACATATGTGTGCGAGAAACTGCGCCACAAAACAGTGTCGTTATTGTCGATATGAATATGCCAATGCAGCCATTGAGGCGGCCGATCAC GGCGGACTCTGCTCTTATGAATCCTAATTCTAGGATTCTCGCGTTGAAAGCTCAACTCCCGGGCACCACTCAGGATCACTTGCAAATATTTAATATTGAG ATGAAGACAAAAATGAAATCATACCAGATGCCCGAGCAGATTGTGTTCTGGAAGTGGATAACTCCCAAAATGTTGGGGCTTGTCACACAGTCATCTGTCT ATCATTGGTCCATTGAAGGTGACTCGGAACCCGCTAAGATGTTTGAGCGAACAGCTAATTTGGTGAACAATCAGATAATAAATTACCGATGTGACCCTTC AGAGAAGTGGTTAGTTTTGATAGGGATTGCTCCAGGGTCACCAGAGAGGCAACAACTAGTGAAAGGAAACATGCAGCTTTTCTCAGTGGAGCAACAGCGT AGCCAAGCTCTTGAAGCACATGCAGCAGCATTTGCCCAATTCAAGGTTCCTGGAAATGAGAATCCGTCTACTCTCATTTCTTTTGCCACGAAGAGCTTCA ATGCTGGGCAGATTACCTCGAAATTGCATGTTATTGAACTTGGTGCTCAACCAGGGAAACCTTCATTTACAAAGAAACAGGCAGATCTTTTCTTTCCTCC AGATTTTGCTGATGACTTTCCTGTGGCGATGCAGATATCCCACAAGTTCAATTTGATCTATGTTATCACCAAGCTAGGGTTGCTATTTGTTTATGACTTG GAGACAGCTGCTGCTGTCTACCGAAACAGGATTAGTCCAGATCCAATATTTTTGACATCCGAGGCCTCTGCTGCTGGGGGGTTTTATGCCATTAATAGAC GAGGTCAAGTGCTTCTTGCTACAATAAATGAAGCAACGATTATAGCATTTGTCAGTGGACATTTGAATAATCTTGAGCTTGCTGTTAACCTTGCCAAAAG GGGAAACCTTCCCGGTGCAGAGAATCTGGTTGTGCAGCGATTCCAAGAACTTTTTGCTCAAACAAAATACAAGGAAGCTGCGGAGCTTGCTGCAGAATCC CCACAGGGTATTCTCCGAACACCGGATACAGTTGCCAAGTTTCAGAGTGTTCCTGTACAAGCTGGACAAACTCCCCCACTGTTGCAGTACTTTGGAACTC TACTGACAAGAGGAAAGCTAAATGCATTTGAATCATTGGAACTGTCACGCCTTGTTGTAAATCAAAACAAAAAGAACCTTTTGGAGAATTGGTTGGCTGA GGATAAGTTGGAATGCAGTGAGGAACTTGGTGACCTTGTTAAAGTTGGGTACACTCCTGACTATTTATTCCTGCTCCAAACAATTCTCCGTACAGATCCT CAGGGAGCTGTTAACTTTGCTCTGATGATGTCCCAAATGGAGGGGGGCTGTCCACTCGACTACAATACTATTACTGATCTCTTTCTTCAGAGGAACTTGA TTCGTGAGGCTACTGCCTTCTTGCTGGATGTCTTGAAGCCCAATTTGCCAGAACATGCTTTCCTGCAAACAAAGGTCTTGGAAATCAATCTGGTAACGTT TCCTAATGTTGCTGATGCTATATTGGCTAATGGAATGTTTAGCCACTATGACCGCCCTCGTATTGGACAGCTTTGTGAAAAAGCTGGTCTTTACATTCGA GCTTTGCAACATTATGCTGAGTTGCCAGATATCAAACGTGTCATTGTGAATACACACGCAATAGAGCCACAGTACATTGAAGCGGCTGCTAAAACTGGAC AAATAAAGGAGGTGGAACGTGTCACTAGAGAATCAAATTTCTATGATGCTGAAAAGACGAAGAATTTTCTTATGGAGGCCAAGCTTCCTGATGCAAGGCC ACTGATTAATGTTTGTGACCGGTTTGGTTTTGTTGGGGATCTCACTCATTATCTGTACACAAACAACATGCTCCGGTATATTGAAGGTTATGTTCAGAAG GTGAACCCAGGAAATGCTCCGATGGTTGTTGGGCAGCTGTTGGATGACGAATGCCCTGAAGATTTCATTAAAGGGCTTATTCTCTCTGTCCGTTCTTTGC TTCCAGTCGAGCCCCTTGTGGATGAATGCGAGAAGAGAAATCGGCTACGTCTGCTCACTCAGTTCCTGGAGCACCTTGTTTCCGCTGCTGTCAAGGCCTT CATGACTGCTGACCTTCCACACGAATTGATTGAGCTTCTAGAAAAGATAGTGCTGCAGAATTCTGCATTCAGTGGAAACTTCAATCTTCAAAACCTGCTT ATCTTGACAGCAATCAAGGCAGACCCCTCTAGGGTTATGGATTACATCAACAGATTGGACAACTTTGATGGTCCTGCTGTGGGGGAAGTTGCAGTTGAAG CACAGCTGTATGAAGAAGCCTTTGCAATATTCAAGAAGTTCAACTTGAATGTTCAGGCTGTAAATGTTCTATTAGATAACATCAGAAGCATCGACCGGGC TGTGGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTATGGAGCCAAGTTGCCAAGGCTCAACTTAGGGAGGGTTTGGTCAGTGATGCAATTGAATCCTTC ATTCGCGCAGATGATGCCACTCAATTCCACGAGGTCATTCTTGCAGCTGAGGGTGCTAATGTCTATCATGATTTGGTGAAGTACCTTTTGATGGTCAGGC AAAAATCAAAAGAGCCCAAGGTGGACAGTGAGCTCATTTTTGCATATGCCAAGATTGATCGGCTAGGTGAAATAGAGGAGTTCATACTTATGCCAAATGT GGCTAATCTCCAACTTGTCGGTGACCGCCTATTTGATGATGCTTTATACGAGGCTGCAAAGATCATATTTGCCTTCATATCTAACTGGGCAAAGTTAGCT TGCACACTTGTGAAGCTCAAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAGGCCAACAGTGCAAAAACATGGAAAGAAGTGTGCTTTGCTTGTGTTG ATGCTGAAGAATTCCGATTGGCTCAGATGTGTGGTCTGAATATCATTGTCCAGGTGGATGATTTGGAAGAGGTCAGTGAATTTTATCAGAACAGAGGATA CTTCAATGAACTAATTTCCCTGATGGAGAGTGGTTTGGGTTTGGAACGCGCACATATGGGTATTTTCACCGAGTTGGGGGTTCTTTATGCTAGATACCGC TATGAGAAACTCATGGAGCACATAAAATTATTCTCGACCCGTCTCAATATTCCTAAACTTATCCGAGCATGTGATGAGCAGCAGCATTGGAAAGAACTCA CCTATCTCTACATTCAATATGACGAGTTCGATAATGCTGCTACAACAGTAATGAATCATTCTCCCGAGGCATGGGACCACATGCAGTTCAAGGATATTGT GGTCAAGGTTGCCAATGTGGAGCTATATTACAAGGCTGTTCATTTCTACTTGCAAGAACATCCTGATCTTATCAACGATGTCTTGAATGTATTGGCGCTA CGGGTTGACCATACTCGTGTTGTTGACATTATGCGGAAGGCTGGCCACTTGCTTCTTGTGAAGCCATATATGGTTGCAGTCCAGAGCAATAATGTGTCTG CTGTGAATGAGGCTCTCAATCAGATATACGTCGAGGAGGAGGACTATGACAGGTTACGGGAATCGATCGATTTACACGACAACTTTGACCAGATTGGTCT TGCCCAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGACGAGTTGCTGCATATATTTACAAGAAGGCTGGCAGATGGAAGCAGTCCATTGCATTGTCA AAGAAAGATAATTTATACAAAGATGCTATGGAGACTGCATCACAATCCGGCGACCATGAACTTGCCGAGGAATTGCTTGTTTATTTCATCGAAAAGGGGA AGAAGGAATGTTTCGCTTCTTGCCTCTTTGTGTGCTATGATTTAATTAGGGCAGACATTGCCCTTGAACTTGCTTGGATGAACAACATGCTTGACTTTGC CTTCCCATTCTTGATACAATTCATTCGTGAATACACGGGCAAGGTTGACGAGCTGGTGAAGGATAAACTTGAAGCTCAGAAGGAAGTAAAGGCTAAGGAA CAGGAACAAAAGGATGTGATTGCTCAGCAGAACATGTATGCTCAGTTACTTCCTCTTGCTTTGCCCGCACCTCCAATGCCGGGTATGGCTGGACCCGGGA TGCCAGGAGGTTACGGGCCTCCTCCGCCCATGGGCGGAATGGGAATGCCTCCTATGCCCCCGTTCGGGATGCCTCCAATGGGCAATTATTGA
AA sequence Show only first row Show all	>Lus10028976 pacid=23177307 polypeptide=Lus10028976 locus=Lus10028976.g ID=Lus10028976.BGIv1.0 annot-version=v1.0 MAAANAPITMKEVLTLPSIGISPQFITFTNVTMESEKYICVRETAPQNSVVIVDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE MKTKMKSYQMPEQIVFWKWITPKMLGLVTQSSVYHWSIEGDSEPAKMFERTANLVNNQIINYRCDPSEKWLVLIGIAPGSPERQQLVKGNMQLFSVEQQR SQALEAHAAAFAQFKVPGNENPSTLISFATKSFNAGQITSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKFNLIYVITKLGLLFVYDL ETAAAVYRNRISPDPIFLTSEASAAGGFYAINRRGQVLLATINEATIIAFVSGHLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES PQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRTDP QGAVNFALMMSQMEGGCPLDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLYIR ALQHYAELPDIKRVIVNTHAIEPQYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVGDLTHYLYTNNMLRYIEGYVQK VNPGNAPMVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLL ILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESF IRADDATQFHEVILAAEGANVYHDLVKYLLMVRQKSKEPKVDSELIFAYAKIDRLGEIEEFILMPNVANLQLVGDRLFDDALYEAAKIIFAFISNWAKLA CTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQMCGLNIIVQVDDLEEVSEFYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYR YEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDIVVKVANVELYYKAVHFYLQEHPDLINDVLNVLAL RVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNQIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALS KKDNLYKDAMETASQSGDHELAEELLVYFIEKGKKECFASCLFVCYDLIRADIALELAWMNNMLDFAFPFLIQFIREYTGKVDELVKDKLEAQKEVKAKE QEQKDVIAQQNMYAQLLPLALPAPPMPGMAGPGMPGGYGPPPPMGGMGMPPMPPFGMPPMGNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	1.0	0.9804
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	1.4	0.9684
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	1.7	0.9644
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	2.2	0.9593
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	2.8	0.9603
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	3.5	0.9579
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	4.9	0.9463
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	5.1	0.9445
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	5.9	0.9525
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	6.0	0.9499

Compare expression of checked genes

Lus10028976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.