Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 733 / 0 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT1G78800 55 / 8e-08 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007500 [exp] 873 / 0 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008976 [exp] 226 / 4e-72 AT2G40190 192 / 1e-59 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 223 / 7e-69 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008975 [exp] 202 / 9e-64 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007909 [exp] 175 / 3e-53 AT2G40190 152 / 3e-45 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007501 [exp] 144 / 4e-41 AT2G40190 103 / 2e-26 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010207 [exp] 122 / 4e-33 AT2G40190 111 / 6e-30 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10021233 [exp] 62 / 7e-12 AT2G40190 52 / 3e-09 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10031614 [exp] 57 / 7e-10 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 769 / 0 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 255 / 2e-83 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G109000 [exp] 56 / 2e-08 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10028977 pacid=23177169 polypeptide=Lus10028977 locus=Lus10028977.g ID=Lus10028977.BGIv1.0 annot-version=v1.0 ATGGCGACGATCACTGTCCTCGTTCTATCTCTTCTCAGCTCTCTCATCTTCTACATCTTCACCTTCATCGCCTTCCACATTCTCACCTCCCGCCGTAACC GCCAAAAAGCCATCGGTTTCTTCCACCCTTACACAAACGACGGCGGCGGCGGCGAACGCGTGTTATGGTGCGCAGTCAAAGCAATCCAGGAAGAAATCCC CGACTTCGATTGCATCGTCTACACCGGCGATCACGACGCCTCTCCTCAGTCCCTCCTCGCCCGCGCCACCGACCGATTCGGCGTCCAATTGCTCCGTCCG CCGGAGGCGGTCCATCTTCACTGGAGGAAATGGGTGGAGGAGTCTACTTATCCTCGATTCACGATGATCGGACAGAGCCTCGGTTCGATTCTACTCTCCT GGGAAGCTCTATCGAAGTTCACTCCTCTGTATTACTTCGATACTAGTGGATACGCTTTCACTTACCCGATCGCTCGATTGTTCGGATGCAAAGTCGTTTG CTACACGCATTACCCGACGATCAGCTTGGATATGATCTCCCGCGTTCGTCGCCGGAGCTCCATGTATAACAACGACAACTCAATTGCGCGCAGTGATTGG CTATCGCAGTGTAAGCTCATCTATTACACATTCTTCAGCTGGATATATGGATTTGTAGGCTCTTGTTCACATCTGGCTATGGTGAACTCTTCCTGGACTC GATCTCACATCGAAAAGCTTTGGCGTATTCCTGACCGGATCAAGCGAGTCTACCCTCCTTGTGATACATCAGGGCTACAGGTGCTTCCTCTGGAAAGACC GGCGGGAACTCCAGTGTTCATATCAGTAGCTCAGTTCCGTCCTGAGAAGGCGCATCCTCTGCAACTCGAAGCCTTCTCTCTTGCCCTTGCAAAGTTGGAT GCCGAGGTGCCGAGGCCAAAGCTCCAGTTTGTTGGTAGTTGCAGGAATAAAGCAGACGAGGAGAGACTGCAGAAATTGAAAGATAAAGCAATTGAGCTGA AGGTAGATGGAGATGTGGAATTCCATAAGAATGTCATGTACAGGGACTTGATAAAGCTACTGGGAGGTGCCGTTGCAGGATTACATTCTATGATAGACGA GCACTTCGGCATCAGCGTTGTTGAATACATGGCTGCCGGAGCCATACCAATAGCTCATAACTCCGCCGGTCCTAAAATGGACATTGTGCTGGAAGAAGAC GGGGAGTCGACAGGGTTCCTTGCAGAGACAGTCGAAGAGTTTGCAGACGCCATCCTCAAGGTCATAAAGATGTCGGAATCCGAGAGGCTCAAGATCGCTG CAGCCGCCAGGAGAAGGGCTACCAAGTTCTCGGAACAAAGGTTTTATGAGGACCTCAAAACTGCCATTCGACCTGTACTAGTACGAAGCCGTTCTTCCAC AAATACCTGA
AA sequence Show only first row Show all	>Lus10028977 pacid=23177169 polypeptide=Lus10028977 locus=Lus10028977.g ID=Lus10028977.BGIv1.0 annot-version=v1.0 MATITVLVLSLLSSLIFYIFTFIAFHILTSRRNRQKAIGFFHPYTNDGGGGERVLWCAVKAIQEEIPDFDCIVYTGDHDASPQSLLARATDRFGVQLLRP PEAVHLHWRKWVEESTYPRFTMIGQSLGSILLSWEALSKFTPLYYFDTSGYAFTYPIARLFGCKVVCYTHYPTISLDMISRVRRRSSMYNNDNSIARSDW LSQCKLIYYTFFSWIYGFVGSCSHLAMVNSSWTRSHIEKLWRIPDRIKRVYPPCDTSGLQVLPLERPAGTPVFISVAQFRPEKAHPLQLEAFSLALAKLD AEVPRPKLQFVGSCRNKADEERLQKLKDKAIELKVDGDVEFHKNVMYRDLIKLLGGAVAGLHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEED GESTGFLAETVEEFADAILKVIKMSESERLKIAAAARRRATKFSEQRFYEDLKTAIRPVLVRSRSSTNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	2.4	0.9259
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	5.5	0.9233
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	7.5	0.9225
AT5G08060			unknown protein		Lus10017854 [exp]	8.2	0.8814
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	8.4	0.8872
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	8.9	0.9022
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	9.4	0.9095
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	9.5	0.9048
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	9.9	0.8958
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	10.6	0.9045

Compare expression of checked genes

Lus10028977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.