Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40200 150 / 6e-45 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 108 / 6e-29 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 97 / 2e-23 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 91 / 1e-21 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G41130 85 / 8e-20 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 72 / 2e-14 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 58 / 9e-10 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 55 / 7e-09 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 54 / 2e-08 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 54 / 3e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007502 [exp] 351 / 2e-124 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 111 / 1e-29 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 110 / 3e-29 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 110 / 4e-29 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 106 / 1e-27 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 101 / 2e-25 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10021711 [exp] 102 / 3e-25 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 100 / 7e-25 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 100 / 1e-24 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070800 [exp] 236 / 2e-78 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 214 / 9e-70 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 106 / 5e-28 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 105 / 7e-28 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.010G130000 [exp] 101 / 2e-25 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 100 / 2e-25 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 99 / 2e-25 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 98 / 1e-24 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 98 / 6e-24 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G065500 [exp] 95 / 6e-24 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028978 pacid=23177322 polypeptide=Lus10028978 locus=Lus10028978.g ID=Lus10028978.BGIv1.0 annot-version=v1.0 ATGGACTTTACTGACAATGGAGATGAATCGGCATTCCCCTTTTCATGGTCCAACTGCAGTTTCTTCCCAGTCCATGAATCTGCAGAGGATAAAGCGGCTT CCAGCTCCAGAAGCCATAGCCAAGCTGAGAAGCGCAGACGAGACAGAATCAACGCTCAGCTCACCACCCTAAGGAAACTCATCCCCAAATCCGACAAGAT GGACAAGGCGGCTCTGCTGGGAAGCGTGATCGAGCAAGTGAGGGATTTGAAGAGCAAAGCTAACGAAGTGGAGAAGCAAGTCACCGTCCCGTCGGAAATC GACGAGATCAGCGTCGATTGCTGCGACGTAGGAGGAGGAGGAGGAGGAGGAGATGACAACAACGTGTTCTTCGTCAGAGCTAGTTTGACGTGTGAGGATC GGCCGGAGTTGTTATCCGAGCTGATCCGCATGGTGAAAGGTCAGCGGCTTGAGATTGTACACGCTGACATTACCAGCGTCGGCGGGAGAGTGAAAAGCGT CTTCGTGTTTTATAACAACGGCGGTGGCGATAAGAGATCGGTTGTTAGCGGGATCAAACAGTCGCTTAACGTAGTTCTGAGTAGAATCACGTCGGCTACT GTGCCTTCCAGTTATCGTATTAGGAGCAAGCGGCAGCGGTTCTTCATGCCGTCGAATTGA
AA sequence Show only first row Show all	>Lus10028978 pacid=23177322 polypeptide=Lus10028978 locus=Lus10028978.g ID=Lus10028978.BGIv1.0 annot-version=v1.0 MDFTDNGDESAFPFSWSNCSFFPVHESAEDKAASSSRSHSQAEKRRRDRINAQLTTLRKLIPKSDKMDKAALLGSVIEQVRDLKSKANEVEKQVTVPSEI DEISVDCCDVGGGGGGGDDNNVFFVRASLTCEDRPELLSELIRMVKGQRLEIVHADITSVGGRVKSVFVFYNNGGGDKRSVVSGIKQSLNVVLSRITSAT VPSSYRIRSKRQRFFMPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	2.0	0.9004
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	2.8	0.8896
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	4.7	0.8654
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10030175 [exp]	5.1	0.8402
					Lus10034297 [exp]	6.8	0.8460
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	7.5	0.8567
AT5G61820			unknown protein		Lus10033851 [exp]	7.9	0.8729
AT3G22970			Protein of unknown function (D...		Lus10039397 [exp]	9.3	0.8176
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	9.9	0.8736
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	10.0	0.8795

Compare expression of checked genes

Lus10028978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.