Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21945 39 / 0.0005 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007504 [exp] 213 / 7e-71 AT3G22040 42 / 3e-05 Domain of unknown function (DUF26) (.1) Lus10040943 [exp] 151 / 5e-47 AT4G23180 39 / 9e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10009833 [exp] 150 / 2e-46 AT4G23180 39 / 7e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10011438 [exp] 52 / 7e-09 ND 35 / 0.004 Lus10012623 [exp] 51 / 2e-08 ND 38 / 0.001 Lus10015472 [exp] 51 / 3e-08 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10033389 [exp] 50 / 6e-08 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10028049 [exp] 49 / 2e-07 AT1G04520 38 / 9e-04 plasmodesmata-located protein 2 (.1) Lus10028026 [exp] 49 / 2e-07 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 54 / 2e-09 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028980 pacid=23177308 polypeptide=Lus10028980 locus=Lus10028980.g ID=Lus10028980.BGIv1.0 annot-version=v1.0 ATGAGCCGCCTATTGATCTTTGCCTTCGCCACTACCGCCCTTGTCGTCGTATTACTAACCGCCGGCATTAACGCCTCCAACGCAACATCCCCATCTCCAT CTCCATCTCCATCTCCATCACCATCTCCATCTCGATCGCGATCACCGTCGCCATCTCCATCACCGTCGCGCTTTCGATCTCTATCACCATCGCGGTCGCC AACGAAATCACACTCTTCACACTCTTCATCGCCGACTATGTCCCCTCGGCCGGCGGTGGCGGGAGTGGTGTGCAACGAGACGAGTTACACGAACGTGTAC CCGATCGAAAACTACGTGAAGCACGTGCTGGAGGAGCTGGGCGACGAGGTGAGCAACAGCAAGGATTACGCGATGGCTATCAAGTTTCCGGAAATAGACA GGCCGATTATGATGGGACAGGGGGCATGTACGAGGAACATGTCGGCGGCGGATTGCTCCGGCTGTCTGAAGGACGGGGCGAAGAAGGTTATTGCGAGGTG TCCTCATAAGGTGGGAGCTCGGTTCAACGCCACCGGATGCAAATTGTGGTACGACGTTTATCAGGATGTCGTCTGA
AA sequence Show only first row Show all	>Lus10028980 pacid=23177308 polypeptide=Lus10028980 locus=Lus10028980.g ID=Lus10028980.BGIv1.0 annot-version=v1.0 MSRLLIFAFATTALVVVLLTAGINASNATSPSPSPSPSPSPSPSRSRSPSPSPSPSRFRSLSPSRSPTKSHSSHSSSPTMSPRPAVAGVVCNETSYTNVY PIENYVKHVLEELGDEVSNSKDYAMAIKFPEIDRPIMMGQGACTRNMSAADCSGCLKDGAKKVIARCPHKVGARFNATGCKLWYDVYQDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21945			Receptor-like protein kinase-r...		Lus10028980 [exp]	0	1
					Lus10020157 [exp]	4.5	0.9126
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	6.0	0.9244
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	15.3	0.9119
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	19.6	0.8983
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	19.7	0.9108
					Lus10021703 [exp]	24.4	0.8827
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	28.2	0.9074
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	32.2	0.8945
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	33.4	0.9074
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	33.7	0.9039

Compare expression of checked genes

Lus10028980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.