Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40230 491 / 2e-172 HXXXD-type acyl-transferase family protein (.1) AT1G27620 316 / 1e-103 HXXXD-type acyl-transferase family protein (.1) AT3G48720 194 / 4e-57 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 191 / 1e-55 HXXXD-type acyl-transferase family protein (.1) AT5G41040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 176 / 8e-50 HXXXD-type acyl-transferase family protein (.1) AT5G07080 169 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT3G03480 158 / 3e-43 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT3G47170 158 / 4e-43 HXXXD-type acyl-transferase family protein (.1) AT5G48930 151 / 7e-41 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007509 [exp] 728 / 0 AT2G40230 485 / 4e-169 HXXXD-type acyl-transferase family protein (.1) Lus10024278 [exp] 266 / 4e-84 AT1G27620 550 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 199 / 1e-58 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 197 / 9e-58 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 195 / 3e-57 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10033079 [exp] 183 / 4e-52 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10017744 [exp] 182 / 5e-52 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 179 / 1e-50 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10035189 [exp] 175 / 2e-49 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071200 [exp] 531 / 0 AT2G40230 544 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G186300 [exp] 526 / 0 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 305 / 2e-99 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 301 / 5e-98 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G100800 [exp] 204 / 8e-61 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 199 / 1e-58 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.006G157100 [exp] 198 / 5e-58 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 197 / 8e-58 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.017G068500 [exp] 185 / 8e-54 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 182 / 5e-52 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028983 pacid=23177154 polypeptide=Lus10028983 locus=Lus10028983.g ID=Lus10028983.BGIv1.0 annot-version=v1.0 ATGGCCAACGACGACAACAACACCAACAACGTTACAGCTTCTCTTTCCGCCGTGAACATCATAGAAGCCACCGTCGTCAAACCCTCCAATCCGACGCCGT CTTGTATCCTCCCTCTCTCCTCCCTCGACTCCCAACTCTTCCTCCGCTTCACCATCGAGTACCTCTTCGTCTTCGATGCATCAAACGACGTCGTCCAACG TTCCCTCTTCACACAGAATCTCAAACTCGCCTTATCCAACATTCTCGTCCCTTACTACCCCTTAGCCGGACGCGTCCGGTTCAGCCACTTCAACTGCTCG TCTTCCCACAACCACCTCGAAGTCAACTGTCAGTCACAGGGTGCACTATTCGTCGAAGCGGAATCTGATTCATTCTGCTTGTCGGACTTCGGCGGGTTTC AAAAGCCAAAGTCCCTCAACCAGTGGCGGAAGCTTCTATCCTTCCACGTGGCTGACGTACTCAAAGGAGCTCCTCCGCTTGTTGTCCAGCTGACGTGGCT CCGCGAAGGTGGAGCCACGTTAGCATTCGGATTCAACCACTGCTTGCTCGACGGAGTAGGCAGCTCCGACTTCCTCAACTCGTTTGCTGAGCTGGCAGCA TCAAGCGTAGGAGCACCTGAGCCGCCTAAGCCGGTTTGGGACCGGCACCTTCTCGAATTTGACGTTCGGTCGAGCTCGAGAATAATCCGTCGCCATCCCG AGTTTAGCCGGGTACCCGACCTGTGTAGCGGCGGGTTTTTGAGTCGCTTTTTGAACGAGAAGCGGCTCACTCCGACATCGATCATCTTTGACCGAAGGAG TCAGGACGAGTTGAAGAGAGTTGCTGAGCTGGCGGGGGAAAAAAACTTCTTCACGTCGTTCGAGGTGTTGGCGGCGCACGTGTGGAGGAGCTGGGCGAGG TCGATGGATTTCCCACGGAACCAAACATTGAAGCTTTTGTTCAGCGTGAACGTGCGCAACCGAGTCAAACCGAGTCTCCCCGCCGGGTATTACGGGAACG CGTTCGTGCTGGGATGTGCCGAAACGACGGCGGGTGAAATTACCATAAAGGGTCTGGGACACGTGGCAATGCTGGTGAAGAAGGCGAAGGAAAAAGTGGA CGACGAGTTCGTTAAGTCGACGGTGGAATCGGTGAGTTCGGGGAAGGTGCCGGACTCGGTGGGTGTGTTGATATTGTCGCAGTGGTCAAGGCTCGGGCTG GAAAGAGTTGACTTTGGGTTGGGGAAACCGGTTAGTGTGGGGCCCGTGTGTGTGGATAGGTACTGTTTGATGCTGCCGGTTCATGGCCAGGTGGACGGCG TTAAGGTGACGTTGGCGGTTCCGACGAGCGGGGCCCGCAAGTATGAGTATTTGGTCAAGAGTCCTTGTTGTTCGTGA
AA sequence Show only first row Show all	>Lus10028983 pacid=23177154 polypeptide=Lus10028983 locus=Lus10028983.g ID=Lus10028983.BGIv1.0 annot-version=v1.0 MANDDNNTNNVTASLSAVNIIEATVVKPSNPTPSCILPLSSLDSQLFLRFTIEYLFVFDASNDVVQRSLFTQNLKLALSNILVPYYPLAGRVRFSHFNCS SSHNHLEVNCQSQGALFVEAESDSFCLSDFGGFQKPKSLNQWRKLLSFHVADVLKGAPPLVVQLTWLREGGATLAFGFNHCLLDGVGSSDFLNSFAELAA SSVGAPEPPKPVWDRHLLEFDVRSSSRIIRRHPEFSRVPDLCSGGFLSRFLNEKRLTPTSIIFDRRSQDELKRVAELAGEKNFFTSFEVLAAHVWRSWAR SMDFPRNQTLKLLFSVNVRNRVKPSLPAGYYGNAFVLGCAETTAGEITIKGLGHVAMLVKKAKEKVDDEFVKSTVESVSSGKVPDSVGVLILSQWSRLGL ERVDFGLGKPVSVGPVCVDRYCLMLPVHGQVDGVKVTLAVPTSGARKYEYLVKSPCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	0	1
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	4.5	0.8399
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	6.9	0.8401
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	8.4	0.8354
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	11.7	0.8314
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	13.8	0.7902
AT3G27090			DCD (Development and Cell Deat...		Lus10012533 [exp]	16.9	0.8358
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	17.6	0.8385
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019431 [exp]	19.4	0.7830
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	22.4	0.8220
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	23.8	0.8190

Compare expression of checked genes

Lus10028983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.