Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041677 [exp] 203 / 1e-64 ND / Lus10041676 [exp] 189 / 3e-59 ND / Lus10018646 [exp] 179 / 3e-56 ND / Lus10010387 [exp] 128 / 6e-37 ND / Lus10026135 [exp] 81 / 2e-17 ND / Lus10008678 [exp] 77 / 5e-16 ND / Lus10033372 [exp] 58 / 1e-09 ND / Lus10039441 [exp] 50 / 7e-07 ND / Lus10016944 [exp] 48 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028987 pacid=23151746 polypeptide=Lus10028987 locus=Lus10028987.g ID=Lus10028987.BGIv1.0 annot-version=v1.0 ATGGCGTCTCGCATTGTGTTCGACTCCAACAAGCTATGGCTCTTCCCATGGAGCGACGGCACGATGAGTGGTAGGATTCCGGCCGGTAACGAACTCAACA CCCACGACGTCCCTCGCAACCTCTACGACTGGCCTCACGTGGGCGGGGTGGGTACGAACTCGGCATCCACCCACATGGAGCTCGAAGTGTTCGGTGTGAT CTTCTCCGGGAAAAGGCTCGAGGATCTCGTCAAGGAGATGATCAACCACCAGGTCCTGGTCAATCAGGAAGGGTTCATGGTTATGTACTTCAACGTCAGC GCTGGAGACATGTACATTGCCTGGGACCACTCCAACCTGGTCCGCCAGCTCAACGACCTCTTCGATTGGTCCAAGTACGGCATGAGTGTCCCCATGCCCC CGGGGACCGTGTGGGACCAGTTCCAGCTCAACACTGGAAAGCTGATGGTGGACAATAAGGATGTTGGGCAGAAAGAGGAGTTGGAGGAGGAGAATCGGAA GCTAGAGGAGGCGAAGAGGATGAACAAGGAGAATGACGAGTTGAAGGCTAAACAGACTGCTGATGCTGCAGAGATCAAGAAGCTGAAGGAGGATGCTGCT GCTAGGATAAGCAGATTTCGCGCCTCACGAATGCTCTCCGAGCATTCCTCTGAAACCCAACAAACCGAACTGAAATTTCGACTTGTGATGTTGTTCTTGA TTAATGAAATTCCATGGCATAAAGTTTCCTGCTTTCTTTATCTTGGTCTGTACTGCTTTCCTTGCTATTGCTTTTGA
AA sequence Show only first row Show all	>Lus10028987 pacid=23151746 polypeptide=Lus10028987 locus=Lus10028987.g ID=Lus10028987.BGIv1.0 annot-version=v1.0 MASRIVFDSNKLWLFPWSDGTMSGRIPAGNELNTHDVPRNLYDWPHVGGVGTNSASTHMELEVFGVIFSGKRLEDLVKEMINHQVLVNQEGFMVMYFNVS AGDMYIAWDHSNLVRQLNDLFDWSKYGMSVPMPPGTVWDQFQLNTGKLMVDNKDVGQKEELEEENRKLEEAKRMNKENDELKAKQTADAAEIKKLKEDAA ARISRFRASRMLSEHSSETQQTELKFRLVMLFLINEIPWHKVSCFLYLGLYCFPCYCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028987 [exp]	0	1
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	5.5	0.7101
					Lus10015620 [exp]	7.7	0.7712
AT2G22795			unknown protein		Lus10007239 [exp]	9.3	0.7707
					Lus10032385 [exp]	11.1	0.7409
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	13.0	0.6924
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10039488 [exp]	15.6	0.6821
AT3G13845			unknown protein		Lus10015617 [exp]	20.0	0.7091
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	21.0	0.7334
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	21.3	0.7521
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	23.0	0.6887

Compare expression of checked genes

Lus10028987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.