Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56460 493 / 2e-176 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 84 / 3e-18 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT1G49670 80 / 3e-16 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G61510 78 / 1e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 77 / 1e-15 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 68 / 2e-12 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G45770 62 / 2e-10 Polyketide synthase, enoylreductase family protein (.1.2) AT4G13010 52 / 2e-07 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT5G63620 45 / 5e-05 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003691 [exp] 562 / 0 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10018450 [exp] 82 / 2e-17 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10002406 [exp] 82 / 1e-16 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10027904 [exp] 81 / 1e-16 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10011233 [exp] 79 / 2e-16 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10009018 [exp] 79 / 6e-16 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10030873 [exp] 75 / 9e-15 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 72 / 1e-13 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10009658 [exp] 59 / 5e-10 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065700 [exp] 517 / 0 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 95 / 6e-22 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G140600 [exp] 92 / 7e-21 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.009G103000 [exp] 88 / 6e-19 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.004G233800 [exp] 82 / 3e-17 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.016G136100 [exp] 81 / 7e-17 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 75 / 6e-15 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 64 / 2e-11 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 62 / 1e-10 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 58 / 3e-09 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028988 pacid=23151866 polypeptide=Lus10028988 locus=Lus10028988.g ID=Lus10028988.BGIv1.0 annot-version=v1.0 ATGGATGCTCTGGTGTGCGAGAAGCTCGGCGATCCGGCGGCAGGCGGAGGCGAATCGCCGATCGTCCTAAAGAAAGACCATCCGATTCCGCCGCTGGAAT CTCCGACCGCCGTCAGGGTGAGGGTGAAAGCCACCAGCTTGAATTTCGCGAATTACCTTCAGATACAAGGGAAATACCAGGAGAAGTATCCCTTGCCGTT CATTCCAGGCTCCGATTACTCCGGCGTCATCGAGGCCGTCGGCTCCGGCGTCTCCCTTTTCAAAGTCGGAGACTCTGTTTGCTCCGTCGCCTCCCTCGGC TCCTTCGCACAGTTCCTCGTCGCCGATCAATCCGAACTACATCTGGTGCCAAAAGAATGCGATCTGGTGGCTGCTGCTGCCGTTCCGGTTGCTTTTGGGA CTTCTCATTTTGCTCTTGTTCACAGAGCCCAGCTAGGTTCCGGCCAGGTTCTTCTGGTTCTTGGAGCAGCTGGAGGTGTAGGCCTTTCTGCTGTTCAAAT TGGCAAAATCTGTGGAGCCATTGTTATTGCTGTTGCTAGGGGAGATGACAAGATTCGGCTTTTGAAGTTGATGGGAGTTGATCATGTAGTGGACTCGACT AAAGAAAGCGTTACCACGAGTGTCAAGAACTTTCTAAAGTCAAGGAAGCTCAAAGGGGTTGATGTTCTGTATGATCCCGTTGGTGGGAAGCTTGCTAAGG AAAGTTTGAAGCTTTTGAATTGGGGTGCGCAGATCTTGGTTATTGGGTTCGCCAGTGGCGAGATACCCGTCATTCCTGCCAACATCGCTCTTGTCAAGAA CTGGACTGTTCATGGACTTTACTGGGGAAGCTACAAGCTCCATAAACCAGCTGTTCTTGAAGATTCTCTCAAGGAGCTGCTTGATTGGATGGCGAGAGGA CTCATCACGATCCACATTTCCCATACTTACAGCCTCTCCGAGGCCAGCCTTGCTTTTGCTGCGATTAAAGATAGGAAAGCGATCGGGAAGGTTATTATTA CCATAGACAACGCAAGCCATTCGAGATCAAAGCTTTGA
AA sequence Show only first row Show all	>Lus10028988 pacid=23151866 polypeptide=Lus10028988 locus=Lus10028988.g ID=Lus10028988.BGIv1.0 annot-version=v1.0 MDALVCEKLGDPAAGGGESPIVLKKDHPIPPLESPTAVRVRVKATSLNFANYLQIQGKYQEKYPLPFIPGSDYSGVIEAVGSGVSLFKVGDSVCSVASLG SFAQFLVADQSELHLVPKECDLVAAAAVPVAFGTSHFALVHRAQLGSGQVLLVLGAAGGVGLSAVQIGKICGAIVIAVARGDDKIRLLKLMGVDHVVDST KESVTTSVKNFLKSRKLKGVDVLYDPVGGKLAKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKLHKPAVLEDSLKELLDWMARG LITIHISHTYSLSEASLAFAAIKDRKAIGKVIITIDNASHSRSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	0	1
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	3.5	0.8819
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	3.5	0.8938
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	4.2	0.8924
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	6.9	0.8848
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10026878 [exp]	7.2	0.8681
AT2G24550			unknown protein		Lus10020142 [exp]	7.2	0.9016
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10010011 [exp]	8.1	0.8821
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	9.7	0.8878
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	13.1	0.8847
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10041908 [exp]	13.7	0.8034

Compare expression of checked genes

Lus10028988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.