Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10840 425 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 116 / 8e-28 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 112 / 3e-26 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 100 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 62 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 53 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 45 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G02340 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003690 [exp] 359 / 6e-124 AT3G10840 227 / 2e-72 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 54 / 1e-07 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039814 [exp] 51 / 1e-06 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10025172 [exp] 49 / 1e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10037072 [exp] 47 / 1e-05 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 47 / 2e-05 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10036913 [exp] 46 / 4e-05 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10041763 [exp] 44 / 0.0003 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 43 / 0.0004 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092900 [exp] 489 / 7e-171 AT3G10840 404 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 117 / 4e-28 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059400 [exp] 111 / 6e-26 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 55 / 6e-08 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 53 / 3e-07 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 50 / 2e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G018900 [exp] 48 / 9e-06 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 45 / 8e-05 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 44 / 0.0002 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 42 / 0.0004 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028989 pacid=23151737 polypeptide=Lus10028989 locus=Lus10028989.g ID=Lus10028989.BGIv1.0 annot-version=v1.0 ATGAATAGCAGCGGGATAGCAATTTCATCGCCTCAGTTTCCAAATCTGTCCAATTCGTTCAGAAACAGAAGCATTAATGTGGGTTCTGTAATCAAATTGA TTCATGGTCGTTCAGTTACAGCCTCTGCTTCTTCACTCAGTGGCACTTTCCCGCCGGAGCAGCTGCCGGCGAAGGAGAAGAAGAAGAAGAAGCAAATAGC TGGAATTGAGCAGGATGAACTGTTGGACCCCGAACTTCTAGCTGACCCAGACAGTTGCTTCTGCGAGTTTCGCGGTTTAAAGATCCACCACAAGATATAC GAATCGCCGCCGTCGTCTACGGCGGAAGCGGAAGGAAATGGTGGGTTTCCAATCATCTTATTGCACGGATTTGGAGCTTCTGTGTTCTCGTGGAGCAGAG CGACGAAGAGGCTGGCGGAGGCTACATCTGCCCCTAAAGTTGTTGCCTTTGACCGGCCTGCATTTGGGTTGACGTCCAGAGTGGATCCTTCTTCGCTAAT CAAGGCTGGTGGTGATGATTCCAAGCCGCCGCTGAATCCTTACTCCATGGCGTTTGCTGTGCTGGTTACATTGTACTTCGTTGATTTCTTGCAGGCTGAG AAATCGGTCCTTGTCGGGCATTCTGCTGGTTGCCTTGTAGCAGTCGACACGTACTTCGAGGCTCCCGATCGCGTCGCAGCTCTGATCCTCGTTGCTCCGG CAATATTCGCTCCCAATCCAAGTCAAAATGTTCCGGAAAGAGACAGCCTTGCTGAAGGGGATCGTGAAAGGGAGAATGTTGAAGGCTTTTTAGGTATGCT CGGGAAGCCATTCGTCGCGCTCTTGAAGATACTGTCGCAAATCGCTGCATCCATAGCTCGTACCACGCTTAAGTTGCTGAACGGGATGGTGAACATGCTC AGCTCTCTGTATAAGAAAGCTCTTTCCGCCATTCTGTGTTCTGCCTTCGGTGTAATGCTGATACGAATGGCGATCAATCGATTTGGTGTAGCAGCGGTAA AAAATGCGTGGTACGATCCTAGTCAAGTCGGCGAAGAAATCGTGAATGGCTATACAAAGCCGTTAAGAGTCAAAGGTTGGGACAAGGCGCTCGCGGAATT CACTGCAGCAACTATTGCAGTCATCGAGTCTGAACTGAGGCCACCGGGATCGAAAAGGCTCCATGAAATTACTTGTCCTGTTCTGATAGTGACGGGCGAC ACAGATCGAATCGTGCCAGCTTGGAACGCGAAGCGACTTTCACAAGCCATACCTGGATCTAGGTTCGAAGTAATCAAGGAATGCGGCCACCTCCCCCACG AAGAGAAAGTGGAAGAGTTTGTATCTCTTGTTCAGAAGTTTCTCCAGAGAGCTTTCAGTGATATGAAGGAGCCATCAGTGTAA
AA sequence Show only first row Show all	>Lus10028989 pacid=23151737 polypeptide=Lus10028989 locus=Lus10028989.g ID=Lus10028989.BGIv1.0 annot-version=v1.0 MNSSGIAISSPQFPNLSNSFRNRSINVGSVIKLIHGRSVTASASSLSGTFPPEQLPAKEKKKKKQIAGIEQDELLDPELLADPDSCFCEFRGLKIHHKIY ESPPSSTAEAEGNGGFPIILLHGFGASVFSWSRATKRLAEATSAPKVVAFDRPAFGLTSRVDPSSLIKAGGDDSKPPLNPYSMAFAVLVTLYFVDFLQAE KSVLVGHSAGCLVAVDTYFEAPDRVAALILVAPAIFAPNPSQNVPERDSLAEGDRERENVEGFLGMLGKPFVALLKILSQIAASIARTTLKLLNGMVNML SSLYKKALSAILCSAFGVMLIRMAINRFGVAAVKNAWYDPSQVGEEIVNGYTKPLRVKGWDKALAEFTAATIAVIESELRPPGSKRLHEITCPVLIVTGD TDRIVPAWNAKRLSQAIPGSRFEVIKECGHLPHEEKVEEFVSLVQKFLQRAFSDMKEPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	1.4	0.9045
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	2.0	0.8891
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	4.5	0.8748
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	4.9	0.8880
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	5.7	0.8786
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003367 [exp]	6.8	0.8526
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	7.9	0.8812
AT2G17972			unknown protein		Lus10013879 [exp]	8.4	0.8846
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	14.3	0.8817
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	14.6	0.8850

Compare expression of checked genes

Lus10028989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.