Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19985 197 / 7e-63 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT1G32070 61 / 7e-11 ATNSI nuclear shuttle interacting (.1.2.3) AT1G26220 49 / 9e-07 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003688 [exp] 281 / 1e-96 AT4G19985 110 / 2e-30 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10003689 [exp] 138 / 1e-41 AT4G19985 65 / 2e-14 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10029099 [exp] 57 / 1e-09 AT1G26220 239 / 6e-81 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10003245 [exp] 57 / 3e-09 AT1G32070 324 / 2e-109 nuclear shuttle interacting (.1.2.3) Lus10035604 [exp] 57 / 3e-09 AT1G32070 322 / 8e-109 nuclear shuttle interacting (.1.2.3) Lus10013061 [exp] 49 / 6e-07 AT1G26220 244 / 6e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065400 [exp] 255 / 4e-85 AT4G19985 213 / 3e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.016G140000 [exp] 61 / 7e-11 AT1G32070 287 / 3e-98 nuclear shuttle interacting (.1.2.3) Potri.008G113600 [exp] 56 / 2e-09 AT1G26220 252 / 3e-86 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10028990 pacid=23151669 polypeptide=Lus10028990 locus=Lus10028990.g ID=Lus10028990.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCCGCCGCCATTAGTATCGCCGGCGCGCTCCAGCTGATTGCTCTTCACGATCGCAGCTCCACCAAGAACACCTCCATGGAAACCAGCTTAG CAAGAAGAAGAAGAAGAGAACAGGGGAACAGCTCTCAAACTCGCGCAACTGTTCCTATCTACATCTCAACAAACCCATCTCACGTCGACCCACAACAGCT CCGCCGCCTGTTCTCCCTCTGCAACCACTCCTGCCACCGCTTCCCCAAGTCAATTGACGGAGACGCCGCTGTTGCCGTTGAAGCTGTCGATTTGAAAAAG CTTAGAATCGCTCTCTCACATAGCTCCGTCCTCGTGTCCGTCTTCTGTAACCGTCGGAATGCTGAAGATGAAAAAGGGGAAGGAGATGGGTTTGTGGAGG ATCTGTTGCAGAGATTGATTCCTCCGGCTCTTATGATCTCTCCTTCCTATGGGCAGCTTGTGGGGTTTGGTAGAGTTGTCACGGATGTGGGATTGACTGC TTCAATCCACGATGTGGTGGTTGTCCCTCAACTGCAAGGAATGGGAATTGGGAGGATGATAGTTCAGAAAATCCTAAGAATATTGACAAGCAGAGACATT TATGACATTGCAGCCCTTTGCTCACCCAAGGAGAGGCTGTTCTTCAGTGCTTGTGGGTTTAGAGATGACATTTTGGGATCCACGACTATGATGTACACAA GGACAGCCTCCATCCATGATGACGGTTCCGGTAAACTCGTTGGGAGGAAGCTTTTGCTGATTCCTCCTCTTAAGGTGAACAGTTAG
AA sequence Show only first row Show all	>Lus10028990 pacid=23151669 polypeptide=Lus10028990 locus=Lus10028990.g ID=Lus10028990.BGIv1.0 annot-version=v1.0 MGVPAAISIAGALQLIALHDRSSTKNTSMETSLARRRRREQGNSSQTRATVPIYISTNPSHVDPQQLRRLFSLCNHSCHRFPKSIDGDAAVAVEAVDLKK LRIALSHSSVLVSVFCNRRNAEDEKGEGDGFVEDLLQRLIPPALMISPSYGQLVGFGRVVTDVGLTASIHDVVVVPQLQGMGIGRMIVQKILRILTSRDI YDIAALCSPKERLFFSACGFRDDILGSTTMMYTRTASIHDDGSGKLVGRKLLLIPPLKVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	0	1
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	1.4	0.9284
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	1.7	0.9300
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	2.4	0.8965
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	3.0	0.9258
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10016358 [exp]	3.0	0.8838
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	3.2	0.8992
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	3.5	0.9128
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	4.9	0.8862
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10043210 [exp]	5.1	0.8623
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	5.5	0.8795

Compare expression of checked genes

Lus10028990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.