Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20350 283 / 5e-97 oxidoreductases (.1.2) AT1G31600 51 / 2e-07 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003687 [exp] 483 / 1e-175 AT4G20350 294 / 4e-101 oxidoreductases (.1.2) Lus10037263 [exp] 49 / 2e-06 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161600 [exp] 344 / 1e-120 AT4G20350 295 / 3e-101 oxidoreductases (.1.2) Potri.003G106300 [exp] 53 / 6e-08 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028991 pacid=23151836 polypeptide=Lus10028991 locus=Lus10028991.g ID=Lus10028991.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAAGATTTCCAGGTGGGCAGTGTCCCAACTGTGATGCATCTGCCTCAGTTCGTCACTGAAGCTGACGAGTCCCATCTAATCGATAAGATTT ATGAATCCCCTATGTCGAAGTGGAAACCATTGAAGAATAGAAGATTGCAGAATTGGGGTGGAGTTGTCCATGAGAAAGGTCTTTTGCCACAAGAACTTCC TCCTTGGCTAACAAAAATCACACAGAGAATATGCGAAGAATCTGGACTTTTCCCTTCTGCAATTAATCATGTTCTCATCAATGAATATCTCCCCAGTCAA GGCATAATGCCCCATCAAGATGGACCGGCCTATTTTCCAGTGGTAGCTATTCTTTCTCTCGGATCTCCCGCTGTTATGGACTTCACACCCCATTCGAGGC TACGAATGTGCAATAACCCTCCAGAGTGTGAAGCTGAAAGTGGAAATCTTGGAAGTGAAGCCTCTGAGGCTGAGACGGACGAGTGGATAGACGATCACCA CCCGTTTTCGGTTGCACTGATGCCTAGGAGCTTGCTGATATTCAAGGACAATGCCTATTCAGACTACCTCCATGGTATTAAGGACACAGAGGAGCATGAA TATGATAAGGCCGTAAATGTTCAACAAGATACCCCCGATGCAGTGAGGAACAAGGATAAGGCGACCATTCATTGTGCTGCAACACGAATTTCGCTGACTT GTCGATTGGTATTGAAGGTTCACAAGAATCTGTTCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10028991 pacid=23151836 polypeptide=Lus10028991 locus=Lus10028991.g ID=Lus10028991.BGIv1.0 annot-version=v1.0 MGFEDFQVGSVPTVMHLPQFVTEADESHLIDKIYESPMSKWKPLKNRRLQNWGGVVHEKGLLPQELPPWLTKITQRICEESGLFPSAINHVLINEYLPSQ GIMPHQDGPAYFPVVAILSLGSPAVMDFTPHSRLRMCNNPPECEAESGNLGSEASEAETDEWIDDHHPFSVALMPRSLLIFKDNAYSDYLHGIKDTEEHE YDKAVNVQQDTPDAVRNKDKATIHCAATRISLTCRLVLKVHKNLFKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20350			oxidoreductases (.1.2)		Lus10028991 [exp]	0	1
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	5.8	0.7777
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	13.7	0.7800
AT4G20350			oxidoreductases (.1.2)		Lus10003687 [exp]	17.2	0.7594
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	29.3	0.7665
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	39.2	0.7610
					Lus10025229 [exp]	46.0	0.7440
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	47.9	0.6971
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	54.0	0.7547
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	55.1	0.7513
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	59.1	0.6896

Compare expression of checked genes

Lus10028991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.