Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01830 1288 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 943 / 0 AHK2 histidine kinase 2 (.1) AT1G27320 924 / 0 AHK3 histidine kinase 3 (.1) AT2G17820 167 / 6e-42 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 154 / 3e-38 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G66340 144 / 2e-35 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 115 / 5e-26 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 97 / 3e-20 ERS1 ethylene response sensor 1 (.1) AT4G18130 66 / 9e-11 PHYE phytochrome E (.1) AT3G23150 60 / 7e-09 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003686 [exp] 1944 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 1417 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 1415 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 899 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10015773 [exp] 898 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10006370 [exp] 890 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 717 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10028438 [exp] 152 / 4e-37 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10026917 [exp] 150 / 1e-36 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102900 [exp] 1420 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 1402 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 948 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 927 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 907 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.006G270500 [exp] 151 / 5e-37 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.018G011400 [exp] 147 / 7e-36 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.002G201500 [exp] 136 / 7e-33 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G204200 [exp] 136 / 9e-33 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.007G056400 [exp] 135 / 4e-32 AT2G17820 1475 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10028992 pacid=23151739 polypeptide=Lus10028992 locus=Lus10028992.g ID=Lus10028992.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGTTGCAGCAGCAAATCAGCCAAATCCACAAGCAGTTTGCTGGTAAGGTTGAGAAGAGGGAAAAAATGGAGGGTGGTGGTAGTGGTAGTA AGAGAGCATTCTCAGTTCAGGCTTACAGGCATTGGATTCCCAAGGGATTGTTTGTGTGGATCTTGATGATTTGTTACGGCAGCATTTGGCTGTTCAATTC CATGGAGGATGATAACAAGCTGAGGAGGAAGGAATTACTTGGGAGTATGTGTGACCAGAGGGCTAGGATGTTGCAGGACCAGTTCATTGTTAGTGTTAAT CATGTTCATGCTTTGGCTATCCTTGTTTCTTCTTTCCATTACTTCAAGAACCCTTCAGCTATTGACCAGGAAACGTTTGCAGACTATACTGCAAGAACAG CTTTTGAGCGGCCATTGCTGAGTGGGGTCGCCTATGCAGAAAGAGTGCCAAACTCTGAGAGGGAAGAGTTTGAAAAGAAGCATGGTTGGACGATAAAGAC AATGGAGAAGAGGGAGGCTTCATCCCTACGGAATGAGTATGCACCAACGATATTAACTCAAGAAACTGTCTCTTACCTTCAGTCCATTGACATGATGTCT GGAGAGGAGGATAGGGAGAACATACTGCGTGCTCGGTCCACTGGGAAAGCTGTCATTACGGGACCTTTCAGGTTGCTTGGCTCGCATCATCTCGGTGTAG TGTTGACATTCCCGGTTTACAAATCTAAGCTTCCTCCGTCTCCTACGATAGAGCAGCGAATTGAAGCAACTGCCGGGTATCTTGGCGGTGCCTTTGATGT TGAGTCTCTAGTGGACAACTTACTCGGACAGCTTGCTGGGAATCAAGAAATCTTGGTGCATGTTTATGATGTCACCAACTCATCTGATCACTTGATCATG TATGGTCAAGAGAATCAGGAAGGTGACAAGTCGCTTGTACTCGAGAGTAAACTTGATTTTCGGGATCCATTCAGAAGACATAAGATGATATGCAGATACC ATGAAAAGGCACCGGTGTCACTGTCAACAATCAGCCCGGCGTTATTTGTCTTCGTGATAGGTCTACTAGTAGGTTACATCTTATACAGTGCAGGGACTCA CATTGTGAAAGTTGAGGATGATTTCAATGAAATGGAAGAACTGAAAGGCCGAGCAGAAGCTGCTGATGTTGCGAAATCACAGTTTCTGGCTACAGTCTCA CATGAAATCAGAACTCCGATGAATGGCGTCCTTGGGATGCTTGCGCTGCTACTCCATACCGATCTTAGTTCAACTCAGAGAGATTATGCTCAAACTGCAC AGGCCTGTGGCAAGGCATTGATTACATTAATAAACGAGGTTCTGGACCGGGCCAAAATCGAAGCTGGGAAGTTAGATCTGGAAGCTGTCCCGTTCAACCT TCGAGCTATAACAGATGATGTCCTTTCTTTGTTCTGTGAGAAGTCTAGGAACAAAGGCATCGAGCTCGCTGTGTTTGTTACCGATAATGTTCCTGAGTTG GTTGTTGGGGATCCTGGAAGATTCAGGCAGATCATTACAAACCTTGTGGGAAACTCTGTAAAGTTCACAGAAAGAGGCCATATATTTCTAAGAGTTCATC TAGAGGAGCATGCCAAGGCCGTGACAGATACAGAAGCTCGAAAAATTCGAAATGGAGGATCTGATGAAAATATGCTCATGGCCAATACTTGTAAATTCGA CACTTTAAGTGGTTCCGAGGCTGCTGACGACGGGTGGAGCAGCTGGGATACCTTCAAGTACTTTGTTGCAGAAGAAGGTTTCGGACTTAATAACAACGGT TCATCAAATGGAGTAATGCCTTACGAAGCATCTGGGAATGTCACGGTTAGAGTATGCATAGAAGATACCGGAATCGGAATCCCTCTGGAAGCACAGGACC GTGTTTTCACGCCTTTCATGCAGGCCGACAGTTCGATGTCCAGAAATTACGGGGGAACAGGTATTGGTTTGAGCATCAGCAAGTGTCTGGTTGAACTTAT GGGTGGCAAGATCGAGTTTATTAGCCGGCCTCAGGTTGGAAGTAGATTTTGGTTCACTGCTGTCTTAGGGAGGTGCCACAACAAGAATGGCATCAACGGT ATGGACAAACGAAACTCCGAAGATCTGCCTTCGAATTTCAAAGGATTGAAAGCTGTCATAGTTGATTCCAAACCGGTGAGAGCTGCAGTTACCCGGTACC ACTTGAAGAGGCTTGGCATTGTGGCCGAAATCGCTACCATCTACAAGGTGGTTGGTACCACGTTTCCGGAAGATGGTTCCCTTGCACCCCGAATCAACAG TCAGCCAGACATAGTTCTTGTTGAGAAAGACAACTGGCTTTCCGAGGAAGAGGATATCAGTTCATCAGTAGACTCGAGACAAAACGGACATCATGCCTAT AAGTTACCAAAGAAGATCCTATTAGCTACAAATATAAGCAAAGCTGAGTTCGAGAAGGCGAAAGAAGCAGGTTTCGAAGACATGGTGATCATGAAGCCTT TGAGAGCCAGCATGGTGGCTGCATGTCTTCAGCAAGTTCTTGGAACAGGAAGGAAAAAGTCGCAAGGAAAAGGCGCGGTGGTGGTCAACGATTCCGGGGG ATCTTGCCTTCAGAATCTACTATGTGGCAAGAAGATTCTGGTGGTCGATGACAACAGAGTAAACCGGAGAGTCGCTGCTGGTGCGTTGAAGAAGTTCGGC GCAAATGTCGAATGCGCTGATAGTGGCAAAGCTGCCCTCGAGTTGCTTCAGATACCGCACAGCTTCGATGCTTGCTTCATGGACATTCAGATGCCAGAAA TGGACGGGTTCGAAGCAACGAGGCGCATAAGGGAGATGGAGAAGCAAGCGAACGAGCAGTCGAACGGTAGTCTGCATTTGCCTATACTAGCAATGACAGC TGATGTGATACATGCAACATCAGAGGAATGCTTGAAGTGTGGGATGGATGGATATGTGTCAAAGCCATTTGAGGAACAGAATCTGTATCAGGCAGTTGCC AAGTTCTTCCAAGTTTGA
AA sequence Show only first row Show all	>Lus10028992 pacid=23151739 polypeptide=Lus10028992 locus=Lus10028992.g ID=Lus10028992.BGIv1.0 annot-version=v1.0 MGKKLQQQISQIHKQFAGKVEKREKMEGGGSGSKRAFSVQAYRHWIPKGLFVWILMICYGSIWLFNSMEDDNKLRRKELLGSMCDQRARMLQDQFIVSVN HVHALAILVSSFHYFKNPSAIDQETFADYTARTAFERPLLSGVAYAERVPNSEREEFEKKHGWTIKTMEKREASSLRNEYAPTILTQETVSYLQSIDMMS GEEDRENILRARSTGKAVITGPFRLLGSHHLGVVLTFPVYKSKLPPSPTIEQRIEATAGYLGGAFDVESLVDNLLGQLAGNQEILVHVYDVTNSSDHLIM YGQENQEGDKSLVLESKLDFRDPFRRHKMICRYHEKAPVSLSTISPALFVFVIGLLVGYILYSAGTHIVKVEDDFNEMEELKGRAEAADVAKSQFLATVS HEIRTPMNGVLGMLALLLHTDLSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLDLEAVPFNLRAITDDVLSLFCEKSRNKGIELAVFVTDNVPEL VVGDPGRFRQIITNLVGNSVKFTERGHIFLRVHLEEHAKAVTDTEARKIRNGGSDENMLMANTCKFDTLSGSEAADDGWSSWDTFKYFVAEEGFGLNNNG SSNGVMPYEASGNVTVRVCIEDTGIGIPLEAQDRVFTPFMQADSSMSRNYGGTGIGLSISKCLVELMGGKIEFISRPQVGSRFWFTAVLGRCHNKNGING MDKRNSEDLPSNFKGLKAVIVDSKPVRAAVTRYHLKRLGIVAEIATIYKVVGTTFPEDGSLAPRINSQPDIVLVEKDNWLSEEEDISSSVDSRQNGHHAY KLPKKILLATNISKAEFEKAKEAGFEDMVIMKPLRASMVAACLQQVLGTGRKKSQGKGAVVVNDSGGSCLQNLLCGKKILVVDDNRVNRRVAAGALKKFG ANVECADSGKAALELLQIPHSFDACFMDIQMPEMDGFEATRRIREMEKQANEQSNGSLHLPILAMTADVIHATSEECLKCGMDGYVSKPFEEQNLYQAVA KFFQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	0	1
AT3G05390			unknown protein		Lus10029907 [exp]	1.0	0.9793
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10036062 [exp]	2.2	0.9729
					Lus10024615 [exp]	2.8	0.9781
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	4.2	0.9695
AT3G61920			unknown protein		Lus10023060 [exp]	6.5	0.9700
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	6.9	0.9777
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	7.3	0.9498
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	7.5	0.9738
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	7.7	0.9712
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	8.4	0.9691

Compare expression of checked genes

Lus10028992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.