Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09795 558 / 0 HISN1B, ATATP-PRT2 ATP phosphoribosyl transferase 2 (.1) AT1G58080 553 / 0 HISN1A, ATATP-PRT1 ATP phosphoribosyl transferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003685 [exp] 743 / 0 AT1G09795 580 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057200 [exp] 556 / 0 AT1G09795 565 / 0.0 ATP phosphoribosyl transferase 2 (.1) Potri.004G222400 [exp] 521 / 0 AT1G09795 552 / 0.0 ATP phosphoribosyl transferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0089 [flax] [poplar] GlnB-like PF08029 [flax] [poplar] HisG_C HisG, C-terminal domain CL0177 [flax] [poplar] PBP PF01634 [flax] [poplar] HisG ATP phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028993 pacid=23151662 polypeptide=Lus10028993 locus=Lus10028993.g ID=Lus10028993.BGIv1.0 annot-version=v1.0 ATGTCCCTTCCAGCTCCTCCTTCTTCAAGCCGCTCTCTTTTCCCCATGCGCCGCCCTGTTATGTATCCTTCTACCTCCGGCGGCTTTAGCACCAGAACAA CTGTCCGCTGCTGTGTATTACAGCCTCAGCTTTTGTCCAATGGCGGAGCAGGCCCTAGAGCCTCTGACCGAAACGAGCTCCGCCTTGGCTTGCCTAGCAA AGGCCGTATGGCCGAAGACACTCTCGATCTTCTTAAGTCTCGACTAGCTGCAGGAGGGCAGGAGCCACTTTTATGTGGTACACTGGCATTTGATGTTAAA GAAAATAGTGGGTTTCAATTGAAATGGTTGAAGGTATGCAGCTTCAGGATTAAATTGGGGACTCCGGGAGATTGTCAATTATCGGTCCGCAAGGTCAATC CTCGACAATATGTTGCTGATATTCCTCAGCTGTCGAATTTGGAAGTCTGGTTCCAGCGACCGAAAGACATAGTGAGGAAGTTGTTGTCAGGAGATTTGGA CCTTGGAATCGTGGGCCTCGATATAGTCGGTGAATTTGGCCAGGGAAGTGAAGATCTTATCATTGTACACGATTCACTCGAGTATGGTGATTGCCGTTTA TCCATAGCTATACCAAAGTATGGCATCTTTGAGAACATAAACTCTCTGGAGGAGCTAGCCCGAATGCCTCAATGGACAGCTGACAAACCTATGCGAGTTG CCACTGGATTCACTTACCTAGGACCTAAATTTATGAGAGAGAAGGGACTGAAGCATGTGGCTTTTTCAACTGCTGACGGTGCATTAGAAGCTGCTCCAGC GATGGGCATAGCTGATGCGATTCTAGACCTTGTTAGCAGTGGCACTACTCTCAGAGAAAATAACTTAAAAGAAATTGAAGGTGGAATTGTATTGGAGAGT CAGGCTGTTCTTGTTGCAAGCAAGAAATCGCTAGTGCACCGGAAAGGTTTGCTGGACACAACACATGAAATCATTGAAAGATTGGAGGCACATTTGAGGG CAGCAGGTCAATTCACGGTGGTTGCAAACATGAGAGGAAATAGTGCTGATGAAGTGGCCGAGCGTGTACTGAGCCAGCCATCTTTGGCTGGGTTGCAGGG ACCAACTGTAAGTCCGGTTTTCTGCAACCGGAACGGAGATGTAGTGGTTGACTATTACGCAATAGTCATTTGCGTACCGAAGAAGGCATTGTACAAGTCT GTGCAGCAGCTTAGAGCGATTGGAGGGAGTGGAGTTCTGGTTTCGCCATTGACTTACATATTCGACGAGGAGACACCAAGATGGCGCGAACTCCTCGGAA AACTTGGCTTGTAA
AA sequence Show only first row Show all	>Lus10028993 pacid=23151662 polypeptide=Lus10028993 locus=Lus10028993.g ID=Lus10028993.BGIv1.0 annot-version=v1.0 MSLPAPPSSSRSLFPMRRPVMYPSTSGGFSTRTTVRCCVLQPQLLSNGGAGPRASDRNELRLGLPSKGRMAEDTLDLLKSRLAAGGQEPLLCGTLAFDVK ENSGFQLKWLKVCSFRIKLGTPGDCQLSVRKVNPRQYVADIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDIVGEFGQGSEDLIIVHDSLEYGDCRL SIAIPKYGIFENINSLEELARMPQWTADKPMRVATGFTYLGPKFMREKGLKHVAFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGIVLES QAVLVASKKSLVHRKGLLDTTHEIIERLEAHLRAAGQFTVVANMRGNSADEVAERVLSQPSLAGLQGPTVSPVFCNRNGDVVVDYYAIVICVPKKALYKS VQQLRAIGGSGVLVSPLTYIFDEETPRWRELLGKLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	0	1
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	4.6	0.8828
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	5.3	0.8530
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	7.5	0.8435
					Lus10011890 [exp]	9.5	0.8715
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	11.0	0.8564
AT1G48460			unknown protein		Lus10032738 [exp]	15.0	0.8814
					Lus10018607 [exp]	16.6	0.7974
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	27.3	0.8664
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	28.7	0.8479
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	31.7	0.8081

Compare expression of checked genes

Lus10028993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.