Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17760 928 / 0 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G45990 63 / 5e-10 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 57 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G24270 55 / 2e-07 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT3G13210 45 / 0.0002 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003684 [exp] 1452 / 0 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022874 [exp] 62 / 2e-09 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10005168 [exp] 53 / 1e-06 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Lus10041477 [exp] 49 / 1e-05 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10024952 [exp] 49 / 2e-05 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10034294 [exp] 48 / 3e-05 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106200 [exp] 1071 / 0 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 46 / 0.0001 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.016G062600 [exp] 46 / 0.0002 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05843 [flax] [poplar] Suf Suppressor of forked protein (Suf)
Representative CDS sequence Show only first row Show all	>Lus10028994 pacid=23151774 polypeptide=Lus10028994 locus=Lus10028994.g ID=Lus10028994.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGGTTGAGCTGAAGGATGCATCCAAGTTTAAAGAGCGGGAGACTGAAACAGTTGACAAGTACAATGTAGAGGCTGCAGAAGTCTCAGCAA CTCGAGCTCAGCGTATGCCGATAGCTCAGGCTGCACCTATCTACGAACAACTCCTGCAGTTGTTCCCTACAGCTGCCAAATTTTGGAAACAATATGTGGA GGCCTATATGACTGTGAATAATGATGATGCTACAAAACAGATATTCAGCCGGTGTTTGCTGAACTGTTTTCAAGTTCCTCTATGGGGGTGCTACATCCGG TTCATTAGAAAAGTAAATGAGAAGAAAGGTGCCGAAGGCCTAGAAGAAACAAGAAAAGCTTTTGATTTTATGCTGAGTCATGTAGGGTTGGACATTGCCT CTGGGCCTTTATGGTTGGAGTACATTACATTTCTGAAGTCATTACCGGGGCAGCTGCCGCAGGAAGAGTCACAACGAATGACTACGTTAAGGAAAATATA CCAAAGCGCAATTGTTACGCCTATCAATCACGTTGAGCAGCTCTGGAGAGAATATGAAGTTTTTGAAAACTCTGTCAATCGGCAATTGGCCAAAGGACTG GTATCTGAGTACCAATCAAAATACAACAGTGCCAGGGCTGTATACAGAGAGCGAAAAAAATATGTTGATGAGATTGATTGGAACATGCTGGCTGTTCCAC CAACTGGCTCTAGCAAGGAAGAGCAACAATGGACAGCATGGAGACGACTTTTGGCCTTTGAAAAGTCAAACCCTCAACGGATTGATAGTATTTCCTCAAA CAAACGTATCATGTTCAACTATGAACAGTGCCTCATGTATTTGTACCATTATCCTGATATATGGTATGATTATGCTACTTGGAATGCTAAAAGTGGCTCT GTAGATGCTGCTATTAAAGTATATCAGCGAGCTCTGAAGGCTCTCCCAGATTCAGTGCTGCTGAAGTATGCTTATGCCGAGTTGGAGGAGTCTCGTGGTG CTATCCAGCCTGCAAAGAGAATTTATGAAAGCATTGTGGGTGATGGTACTAATGCAAATGCACTTGCATACATTCAGTTTATTCGGTTTTTAAGAAGGAA TGAGGGAGTAGAAGCTGCTCGGAAGTACTTCCTAGATGCCAGGAAATCCCCCAATTGCCCTTACCAGGTCTATGTTGCTTATGCCTCGATGGCATTTTGT CTGGACAAGGACCCAAAGATTGCACATAACGTTTTTGAGGCAGGAATGAAGCGTTTCATGCAGGAACCAGCATACATTCTTGAATATGTGGATTTCTTGT ACCGTATGAACGATGACAGAAACATCCGAGCACTGTTTGAGCGGGCACTAAGCTCTCTGCCATTGGAGAAATCTGTTGAGGTTTGGAAACGTTTTGTCCA ATTTGAACAGACATATGGAGATCTAGCTAGCATGTTGAAGGTTGAACAAAGAAGAAAAGAAGCATTTTCAAATGTAGACGATGACGCAGGATCGGTGATG GATGGTTCATTGCAAGAAGTTGTGGCACGTTACAGTTTTATGGATCTCTCACCATGTGCCCCCAAGGATATAGATCAGCTAGCCCGGCAAGAGTGGCTTG TTAAGAACATGGGTAAGAAATCTGGAATGATATCCAACGGACCTAGCAAGGGAGCAGGTGCATTCCCGCAATCTCGTAATCAAGAGAAGAACCCTCCTCC TGCAAATCTCACCAGCAACTCGAATCTATCCACAAAAGTCGTGGATCCAGACCATTCCCGTTCGGTAGCTTACGACCCGAGACAAAAACCCGGTAATTTT GATGAAGTACTGAAAGCTACACCACCTGCACTGCTATCGTTCCTCTCGAACTTACCCACAGTCGAAGGTCCATCGCCGAATGTGGATATCGTACTCTCCA TCTGCCTACAGAGCGAAGTTCCTGCCGCGGCAGCTCCTGGTAAGGGCAGCAAGGGAGGAGGGAGCCATCAGGCTACAAGCGACCTTTCCGGTTCGACCAA GTCCCACCCTGCTCCGAGTGGAGGCTCGTCTTTCAAGCATCAGAGGGACAACAGACAGGCCGGGAAAAGGAAGGATTTCAGGCGGCAAGAGGAAGAGGAG AGCTCTACGGTGCAAAGCCAGCCTGCACCACCTCGCGATGTTTTCCGGCTACGACAGATTCGGAAAGCCAGCAGAATAGGCGCGGTGGCGGGTGCTTCAC AGACCGGGTCGACCTCGTATGGAAGTGCATTTTCCGGCGACCTTTCGGGAAGCACCGGCTAA
AA sequence Show only first row Show all	>Lus10028994 pacid=23151774 polypeptide=Lus10028994 locus=Lus10028994.g ID=Lus10028994.BGIv1.0 annot-version=v1.0 MASPVELKDASKFKERETETVDKYNVEAAEVSATRAQRMPIAQAAPIYEQLLQLFPTAAKFWKQYVEAYMTVNNDDATKQIFSRCLLNCFQVPLWGCYIR FIRKVNEKKGAEGLEETRKAFDFMLSHVGLDIASGPLWLEYITFLKSLPGQLPQEESQRMTTLRKIYQSAIVTPINHVEQLWREYEVFENSVNRQLAKGL VSEYQSKYNSARAVYRERKKYVDEIDWNMLAVPPTGSSKEEQQWTAWRRLLAFEKSNPQRIDSISSNKRIMFNYEQCLMYLYHYPDIWYDYATWNAKSGS VDAAIKVYQRALKALPDSVLLKYAYAELEESRGAIQPAKRIYESIVGDGTNANALAYIQFIRFLRRNEGVEAARKYFLDARKSPNCPYQVYVAYASMAFC LDKDPKIAHNVFEAGMKRFMQEPAYILEYVDFLYRMNDDRNIRALFERALSSLPLEKSVEVWKRFVQFEQTYGDLASMLKVEQRRKEAFSNVDDDAGSVM DGSLQEVVARYSFMDLSPCAPKDIDQLARQEWLVKNMGKKSGMISNGPSKGAGAFPQSRNQEKNPPPANLTSNSNLSTKVVDPDHSRSVAYDPRQKPGNF DEVLKATPPALLSFLSNLPTVEGPSPNVDIVLSICLQSEVPAAAAPGKGSKGGGSHQATSDLSGSTKSHPAPSGGSSFKHQRDNRQAGKRKDFRRQEEEE SSTVQSQPAPPRDVFRLRQIRKASRIGAVAGASQTGSTSYGSAFSGDLSGSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	0	1
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	3.9	0.8324
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	6.9	0.8192
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	7.1	0.7960
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	7.7	0.7855
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	8.7	0.8111
AT5G22450			unknown protein		Lus10020607 [exp]	8.9	0.8119
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	9.8	0.8063
AT1G23230			unknown protein		Lus10016701 [exp]	10.0	0.8311
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	10.2	0.7966
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	11.7	0.7752

Compare expression of checked genes

Lus10028994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.