Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31460 260 / 9e-89 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003683 [exp] 418 / 4e-151 AT4G31460 268 / 9e-92 Ribosomal L28 family (.1) Lus10013249 [exp] 382 / 4e-137 AT4G31460 268 / 6e-92 Ribosomal L28 family (.1) Lus10030771 [exp] 128 / 1e-35 AT1G14740 139 / 1e-36 Protein of unknown function (DUF1423) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006900 [exp] 285 / 1e-98 AT4G31460 268 / 8e-92 Ribosomal L28 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [flax] [poplar] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Lus10028995 pacid=23151680 polypeptide=Lus10028995 locus=Lus10028995.g ID=Lus10028995.BGIv1.0 annot-version=v1.0 ATGGCGTTTCGGGGAAGGGAGATGATGAACAAAGCCATGAGAAAAGTAGGAGGCAAGGGAATGCCGCCTGCAGTCAAGGAATCCCTGAAAAAATCCATAC CTGACAAGAAGGTGGTTATGTGCAGAGCTCAGCGTGGTCTGTTCGCCGGAAAACATATTCAATTCGGTAACCAGATCAGTGAAGATGGTGGAAACAAGAC GAGAAGAAACTGGAAGCCGAATGTCCAGGAGAAGAGGCTCTTCAGCTACATTCTGGACCGCCAAATACGAGTAAAGGTCACCACGCACGTCCTCCGCTGC ATAGACAAGGCGGGAGGAATCGACGAGTATCTGCTAAAGACCCCATACCAGAAGATGGACACGGAAATGGGGCTCTTCTGGAAAGCCAAGATAGAGAAGT TGTACGAAGACTTGGGGAAGTCGGACGTGGTTTTCTTCTCTCCCGAAGACGAAGAGAAGTTTGCAGAGGAGTTCAGGGATCTGAAACTGTCGGAACGAGA GGCTCGCAAGGAGCTCAGAAGGAAGATGTATTCAGAGTTTGTGAAGCATAATAAACAAGCTGGCGAAGGGAAAGCTCGGGTTAGCTACATCGTTGCCACT GCAGACATGGCTCCTGGAAAGCTTATAGCTAACAGATGA
AA sequence Show only first row Show all	>Lus10028995 pacid=23151680 polypeptide=Lus10028995 locus=Lus10028995.g ID=Lus10028995.BGIv1.0 annot-version=v1.0 MAFRGREMMNKAMRKVGGKGMPPAVKESLKKSIPDKKVVMCRAQRGLFAGKHIQFGNQISEDGGNKTRRNWKPNVQEKRLFSYILDRQIRVKVTTHVLRC IDKAGGIDEYLLKTPYQKMDTEMGLFWKAKIEKLYEDLGKSDVVFFSPEDEEKFAEEFRDLKLSEREARKELRRKMYSEFVKHNKQAGEGKARVSYIVAT ADMAPGKLIANR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	0	1
AT1G07170			PHF5-like protein (.1.2.3)		Lus10040654 [exp]	3.0	0.8620
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004236 [exp]	4.1	0.8709
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	9.4	0.8322
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	11.2	0.8512
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	11.5	0.8694
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	12.4	0.8295
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	15.0	0.8002
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	15.1	0.8561
AT4G26410			Uncharacterised conserved prot...		Lus10013474 [exp]	17.0	0.7565
AT4G20150			unknown protein		Lus10038391 [exp]	18.0	0.8254

Compare expression of checked genes

Lus10028995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.