Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25570 124 / 6e-35 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT5G38630 107 / 1e-28 ACYB-1 cytochrome B561-1 (.1) AT1G14730 105 / 5e-28 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G26100 99 / 2e-25 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003682 [exp] 328 / 4e-115 AT4G25570 131 / 1e-37 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 134 / 8e-39 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10039216 [exp] 134 / 1e-38 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 120 / 1e-33 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 112 / 2e-30 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 112 / 1e-29 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10027461 [exp] 109 / 8e-29 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10003076 [exp] 81 / 6e-19 AT5G38630 281 / 2e-97 cytochrome B561-1 (.1) Lus10021715 [exp] 82 / 9e-19 AT1G26100 241 / 3e-80 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102400 [exp] 139 / 7e-41 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 124 / 5e-35 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 122 / 3e-34 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.012G141000 [exp] 120 / 8e-34 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.004G103800 [exp] 111 / 3e-30 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.008G115300 [exp] 108 / 4e-29 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.017G111700 [exp] 102 / 9e-27 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.010G131100 [exp] 92 / 9e-23 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G115200 [exp] 89 / 1e-21 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10028996 pacid=23151867 polypeptide=Lus10028996 locus=Lus10028996.g ID=Lus10028996.BGIv1.0 annot-version=v1.0 ATGAGAGGGATGCAGATCTCGGCGTTACCGGTAACGGTGATGGCGCACTTGATAGCCATTGCTACGACGATCCTCGTCCTCGTCTGGCTCCTCAAGCTCC GAGATGGCCTCTCTTGGAGCATCGACCCCATCCCCAACAAAGCTTTTAACGTGCATCCTCTGGTAATGGTGATTGGATTTATAATCATATCAGGAGAAGG AATAATGGCATATAAGACGGTGAGAGGCCAGAGAAGAACGGTTCGGAAAGTGACTCATTTGGTTCTTCAGAGTGTAGCTATGGTGGCGGCAGTGTTTGGG GTGGTTGTGGTTTTTAGGTTCAACCACCTGATTCACTCTCCACACATGATCACTCTCCATTCCTGGCTTGGCATCATCACTGTTTCCTTGTTTGGTTTGC AGTTTGTGCTAGGGGCGGGGTTCTACATGTTCAAAGGGACAAAGATGCCGGCGAAGGCGTCGTATCTCCCGTGGCATGTCTTCCTCGGGAGCATCGTATT CCTGCTGGCGATTGCGACAGCCCTGACCGGCATAGTCCGGCAATTTGGAATCCTAGGACTTGGTCGCACCCAAGAGGGCCTCATCGTCAACTTCATCGGA CTTTTACTTGTTCTTTACGCCGTCGCCGTCGGACTCGCTGTTTCTCTCCCGTATGAGAGGTGA
AA sequence Show only first row Show all	>Lus10028996 pacid=23151867 polypeptide=Lus10028996 locus=Lus10028996.g ID=Lus10028996.BGIv1.0 annot-version=v1.0 MRGMQISALPVTVMAHLIAIATTILVLVWLLKLRDGLSWSIDPIPNKAFNVHPLVMVIGFIIISGEGIMAYKTVRGQRRTVRKVTHLVLQSVAMVAAVFG VVVVFRFNHLIHSPHMITLHSWLGIITVSLFGLQFVLGAGFYMFKGTKMPAKASYLPWHVFLGSIVFLLAIATALTGIVRQFGILGLGRTQEGLIVNFIG LLLVLYAVAVGLAVSLPYER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	0	1
					Lus10000377 [exp]	1.0	0.9201
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	2.0	0.9149
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	4.2	0.8170
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10017678 [exp]	5.3	0.6777
					Lus10039418 [exp]	5.8	0.8449
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	6.2	0.9130
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10033877 [exp]	6.8	0.7367
					Lus10023005 [exp]	6.9	0.8519
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	7.5	0.9035
					Lus10023004 [exp]	8.1	0.7608

Compare expression of checked genes

Lus10028996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.