Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01818 181 / 1e-56 PLATZ transcription factor family protein (.1) AT3G60670 106 / 2e-27 PLATZ transcription factor family protein (.1) AT2G12646 100 / 2e-25 PLATZ transcription factor family protein (.1) AT1G76590 100 / 2e-25 PLATZ transcription factor family protein (.1) AT4G17900 98 / 2e-24 PLATZ transcription factor family protein (.1.2) AT5G46710 98 / 2e-24 PLATZ transcription factor family protein (.1) AT1G31040 98 / 2e-24 PLATZ transcription factor family protein (.1) AT1G43000 94 / 4e-23 PLATZ transcription factor family protein (.1) AT1G32700 94 / 4e-23 PLATZ transcription factor family protein (.1.2) AT1G21000 94 / 1e-22 PLATZ transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003680 [exp] 454 / 5e-164 AT2G01818 183 / 1e-57 PLATZ transcription factor family protein (.1) Lus10013242 [exp] 253 / 2e-83 AT2G01818 213 / 3e-68 PLATZ transcription factor family protein (.1) Lus10030763 [exp] 238 / 9e-78 AT2G01818 202 / 3e-64 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 108 / 1e-28 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 107 / 1e-27 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10027735 [exp] 104 / 3e-27 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10008814 [exp] 102 / 6e-26 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 102 / 2e-25 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10020337 [exp] 96 / 4e-23 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137300 [exp] 187 / 2e-59 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 179 / 2e-55 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 107 / 7e-28 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 106 / 2e-27 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 102 / 2e-26 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 102 / 5e-26 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 100 / 8e-26 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 100 / 2e-25 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 99 / 6e-25 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 98 / 6e-25 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10028998 pacid=23151817 polypeptide=Lus10028998 locus=Lus10028998.g ID=Lus10028998.BGIv1.0 annot-version=v1.0 ATGACGACGATGACGATGAAGAAGGAGGAGGATGACGACAAGAGATTAAGCAGCAGCAGGTGGATCGATACGCTACTGAGTAGCGAATTCTTCGTTCCGT GCGAGCGTCACATGGAGCTGAGGAAGAAGGAGAAGAACGTCTTCTGTTTGGATTGCAGAGCTCTATTATGCAGGCACTGCTCGTCCAATTCCTGCAACTT CAATCGCCATCGCCACATCCAGATTCGCAAGTACGTCTACCAGGACGTCGCCGGCCTCCCCGACATCCAGAACTACCTCGACTGCTCCCTAATTCAGACG TACAAGATCAACGGGGAGATGGCGGTGCATCTGAATCCGAGGCCGATTCGGGAGGATGCGAAGCCGTCGACGAAGGCGAAATTCGGAACGGCGTGTCTGG TTTGCGGAAGGTATCTGCAGGATGTGCCAAACAAATTCTGCTCCATTGCTTGTAAGGTTTCAGGAGTTGGACTTTGCATAGTGGGGGCCGAAACGGCGCC ATTGCCAAGGGAAGGACAACCGCCCGCCAAAAGGCTGTGCATGGAAGCTAATAACGTGGCGGGAAATGAAAATGAGGGGTCAGCTTCAGCACTCACGGAA ACGACGTCGGGTGGTGTGGAGCAAAAAGAAGAGGAACAAGAGGCGGGAGTTGCCGTTAGGGAGACGGAACTTTTGACGGCGCCGTCAGAGTTTTTCCCGG GAAGTTTTAGGAGACGATCGCACCCGAGAAAGGGCGTACCTTGTAGGTCCCCTCTTTTCTAA
AA sequence Show only first row Show all	>Lus10028998 pacid=23151817 polypeptide=Lus10028998 locus=Lus10028998.g ID=Lus10028998.BGIv1.0 annot-version=v1.0 MTTMTMKKEEDDDKRLSSSRWIDTLLSSEFFVPCERHMELRKKEKNVFCLDCRALLCRHCSSNSCNFNRHRHIQIRKYVYQDVAGLPDIQNYLDCSLIQT YKINGEMAVHLNPRPIREDAKPSTKAKFGTACLVCGRYLQDVPNKFCSIACKVSGVGLCIVGAETAPLPREGQPPAKRLCMEANNVAGNENEGSASALTE TTSGGVEQKEEEQEAGVAVRETELLTAPSEFFPGSFRRRSHPRKGVPCRSPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01818			PLATZ transcription factor fam...		Lus10028998 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	1.4	0.9174
					Lus10024788 [exp]	3.5	0.8906
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	6.0	0.8649
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	7.5	0.8890
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	7.5	0.8912
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	11.8	0.8722
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	12.2	0.8629
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	12.7	0.8730
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	15.0	0.8732
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10035014 [exp]	15.0	0.8156

Compare expression of checked genes

Lus10028998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.