Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 99 / 2e-25 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 98 / 5e-25 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G18350 81 / 5e-19 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT5G56580 77 / 3e-17 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT3G06230 75 / 9e-17 ATMKK8 MAP kinase kinase 8 (.1) AT1G73500 74 / 2e-16 ATMKK9 MAP kinase kinase 9 (.1) AT4G26070 71 / 3e-15 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT4G29810 68 / 6e-14 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G40440 68 / 6e-14 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT5G55090 66 / 4e-13 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 99 / 4e-25 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10023664 [exp] 93 / 5e-25 AT1G51660 52 / 5e-09 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10034986 [exp] 78 / 1e-17 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10012938 [exp] 77 / 3e-17 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10001081 [exp] 75 / 5e-17 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10027623 [exp] 71 / 9e-15 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 71 / 1e-14 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10021766 [exp] 63 / 4e-12 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10001137 [exp] 63 / 5e-12 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249300 [exp] 101 / 2e-26 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 97 / 2e-24 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.018G068500 [exp] 76 / 8e-17 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.015G030700 [exp] 74 / 2e-16 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.018G050800 [exp] 73 / 1e-15 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 72 / 3e-15 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.010G049500 [exp] 71 / 5e-15 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 69 / 3e-14 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.014G035500 [exp] 68 / 7e-14 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.001G345500 [exp] 64 / 2e-12 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028999 pacid=23151808 polypeptide=Lus10028999 locus=Lus10028999.g ID=Lus10028999.BGIv1.0 annot-version=v1.0 ATGTGCTTACCTTCAAGCGACCCACAGTCAATGAACTCGAGCAGGATCTTGTACTTGCTCTTGACCAAGTTTGAAAACACACAGTACAAGATCGTGCTCG AGTTCATGAACGGCGGGTCACTCGCCGGGAAGCACATCTCCGAGGTAGGCGAACTTGCTGACGTGTCGCGCCAGATCCTCCAAGGGATGGCCTACATGCA TGGGCTGAGGGTCCCACACTGGGACATCATGTCGTCCAATCTGCTGAGGAATGGACACGTGACAAAGATCACGGATTTCAGGGGAAGCGGGTACCTGTCT ACCATAAGGGACCACAAGGAGTTTATGGATACGATGTCATACCTGAGCCCCGAGAGGATTGACATGGTTTTGCCCGGATCGTCGGAGTGCTTCTTCGCCA GGGATGTATGGGGATTCGGGATGAGTGTCTTGGAGGCGTACTTGGGGACGTAA
AA sequence Show only first row Show all	>Lus10028999 pacid=23151808 polypeptide=Lus10028999 locus=Lus10028999.g ID=Lus10028999.BGIv1.0 annot-version=v1.0 MCLPSSDPQSMNSSRILYLLLTKFENTQYKIVLEFMNGGSLAGKHISEVGELADVSRQILQGMAYMHGLRVPHWDIMSSNLLRNGHVTKITDFRGSGYLS TIRDHKEFMDTMSYLSPERIDMVLPGSSECFFARDVWGFGMSVLEAYLGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10028999 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	10.6	0.7705
					Lus10027893 [exp]	13.0	0.7674
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	18.7	0.7536
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	21.8	0.7444
AT4G02970		AT7SL-1	7SL RNA1 (.1)		Lus10018370 [exp]	21.8	0.7437
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10027895 [exp]	30.2	0.7051
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	30.8	0.7526
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	32.2	0.7069
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	40.7	0.7239
					Lus10023803 [exp]	40.9	0.7141

Compare expression of checked genes

Lus10028999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.