Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14720 452 / 6e-161 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 439 / 2e-155 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G32170 360 / 3e-124 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 335 / 4e-114 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G10550 259 / 5e-85 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 235 / 6e-76 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 224 / 2e-71 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT3G25050 213 / 4e-67 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G13870 204 / 1e-63 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G65730 203 / 2e-63 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013240 [exp] 536 / 0 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 535 / 0 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 360 / 7e-124 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 299 / 2e-100 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10029165 [exp] 261 / 5e-86 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 258 / 1e-84 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 214 / 8e-68 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 213 / 4e-67 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 211 / 1e-66 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102300 [exp] 477 / 2e-170 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 471 / 3e-168 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 367 / 6e-127 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 357 / 6e-123 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 324 / 7e-111 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 251 / 7e-82 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 212 / 6e-67 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.009G006600 [exp] 205 / 2e-64 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.016G098600 [exp] 201 / 2e-62 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.006G122900 [exp] 199 / 4e-62 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10029000 pacid=23151771 polypeptide=Lus10029000 locus=Lus10029000.g ID=Lus10029000.BGIv1.0 annot-version=v1.0 ATGAAGATTAGCTCTGTAGTAGTACAAAGTTGTGCCCTTTTCCTGACTCTGTTTTCCTCTGTTTCTGGGTTCCACCATGGCAATTTTCCTGTAATCACCT TCGACGAAGGCTACACCCATCTCTTTGGGGAAGACAATCTCGTCATCAAAAAAGACGGCACCACCGTTCACTTATCTCTCGATGAAAGAACAGGGTCTGG GATTGTTTCGCAGGATCTTTACTTGCATGGATACTTCAGTGCTTCGATCAAGCTCCCAGCTGATTACACTGCCGGAGTTGTGGTTGCTTTCTATATGTCT AATGGCGACACATTCGAGAAGAACCATGATGAGATTGACTTCGAGTTCTTGGGGAACATTAGGGGCAAAGATTGGAGGATACAGACTAACATATATGGGA ATGGAAGTACAAACCTTGGTAGAGAAGAGAGATACAGTCTCTGGTTTGATCCTTCTGATGACTTCCACCGCTACTCCATCCTCTGGACTCATTCCCACAT CATATTCTACGTTGATGATGTTCCGATTCGAGAAGTGGTAAGAACAATATCGATGGGGGGAGACTTTCCGTCGAAGCCAATGTCTCTATACGCAACGATA TGGGACGGATCGGATTGGGCGACAAACGGAGGGAAGTACAGGGTGAACTACAACTACGCCCCTTACACTACCGAGTTCTCCGACTTCGTCCTCCACGGTT GTGCTGTCGACCCCACAGAACACACCACAACAAACTGCGACACTGTCTATAGAGCTATATCGAAAAATGGGGTGGTCTCAGCCTCTCAGAGGACCAAAAT GGACAGGTTCAGGACCAAGTACATGACCTACTCGTACTGCTACGACCGTGTCAGGTACAACATTCCCCTGTCGGAATGTGCCATCCGGCCCCTCGAAGCA CAACGGCTGAAATCTTTCGATCCGGTCACTTTCGGTGGAGGCAGGCCCCGCCACCACGGGAAGAGGCACCTGAGGAAACCGGCAGTCCATGGTGAGGCAA TATCTATGTAA
AA sequence Show only first row Show all	>Lus10029000 pacid=23151771 polypeptide=Lus10029000 locus=Lus10029000.g ID=Lus10029000.BGIv1.0 annot-version=v1.0 MKISSVVVQSCALFLTLFSSVSGFHHGNFPVITFDEGYTHLFGEDNLVIKKDGTTVHLSLDERTGSGIVSQDLYLHGYFSASIKLPADYTAGVVVAFYMS NGDTFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTNLGREERYSLWFDPSDDFHRYSILWTHSHIIFYVDDVPIREVVRTISMGGDFPSKPMSLYATI WDGSDWATNGGKYRVNYNYAPYTTEFSDFVLHGCAVDPTEHTTTNCDTVYRAISKNGVVSASQRTKMDRFRTKYMTYSYCYDRVRYNIPLSECAIRPLEA QRLKSFDPVTFGGGRPRHHGKRHLRKPAVHGEAISM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	0	1
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	3.0	0.9244
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	3.0	0.8938
AT1G47410			unknown protein		Lus10006481 [exp]	3.2	0.9061
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	4.5	0.8914
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	5.1	0.8698
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	5.3	0.8829
AT1G54150			E3 Ubiquitin ligase family pro...		Lus10000533 [exp]	5.7	0.8625
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	7.7	0.8636
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	8.5	0.8933
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	8.8	0.8279

Compare expression of checked genes

Lus10029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.