Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14830 1027 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 941 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 874 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 816 / 0 ADL1B DYNAMIN-like 1B (.1) AT5G42080 812 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT2G14120 271 / 2e-80 DRP3B dynamin related protein (.1.2.3) AT4G33650 256 / 2e-74 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 214 / 4e-59 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 214 / 5e-59 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60500 130 / 3e-31 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019170 [exp] 1157 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 907 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 824 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 819 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 804 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 789 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 788 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10030255 [exp] 785 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10014041 [exp] 247 / 3e-71 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105900 [exp] 1048 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G135100 [exp] 931 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 927 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 914 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 848 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 825 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 821 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.007G118300 [exp] 261 / 2e-76 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 258 / 2e-75 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.019G068700 [exp] 211 / 4e-58 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10029001 pacid=23151862 polypeptide=Lus10029001 locus=Lus10029001.g ID=Lus10029001.BGIv1.0 annot-version=v1.0 ATGGCAACGATGGAGAGCTTGATCGGACTAGTCAACAGGATCCAGAGAGCGTGTACTGTATTGGGAGATCATGGAGGCGGTGGTGAAGGCATGTCCCTCT GGGAGGCTCTTCCTTCTGTTGCCGTCGTCGGAGGCCAGAGTTCGGGAAAATCGTCCGTGCTTGAAAGCGTGGTCGGCAGAGATTTCCTGCCTCGTGGATC TGGTATTGTTACTCGGAGGCCCCTAGTGTTGCAACTTCACAAGTTAGAGGATGGACGTGCCTCTGATTATGCGGAGTTTCTTCATGCACCGAGAAAGAAG TGGACCGATTTTGCTGCTGTGCGAAAAGAGATCGCAGATGAAACAGATCGTATAACTGGGAAGTCAAAGCAGATATCAAACATCCCAATTCATCTAAGCA TATACTCTCCGAATGTTGTCAATTTAACCCTCATAGATCTTCCTGGGTTGACAAAAGTTGCCGTAGAGGGTCAGCAAGAAAGTATTGTTGAAGATATTGA AAACATGGTCCGCTCGTATGTTGAGAAGCCCAATAGTATCATATTGGCCATTTCTCCAGCAAATCAAGATATTGCCACATCAGATGCCATAAAACTTGCA CGAGAAGTTGATCCTACAGGTGAACGAACGTTTGGTGTGTTGACAAAGATTGATTTGATGGATAAAGGAACCAATTGCTTGGATGTTCTTGAAGGAAGGT CATATAGATTGCAACATCCATGGGTTGGGATTGTAAATCGCTCTCAAGCTGATATCAACAAGAATGTTGATATGATTGTTGCTCGTAGAAAGGAGCGTGA GTATTTTGAAACAAGTCCCGAGTATGGTCATTTATCGAGCAAAATGGGAGCAGAATATCTTGCAAAGCTTTTATCCAAGCATTTAGAAACGGTCATTAGG CAGCGCATACCAAGCATTATTGCTTTGATAAACAAGACAATTGATGAGATCAACGGAGAGTTGGACCGGATTGGCAGGCCTATTGCCGTGGACTCAGGGG CACAGCTTTACACCATTCTTGAACTATGTCGTGCATTTGACCGCGTATTTAAGGAGCACCTTGATGGGGGGCGTCCTGGAGGAGACCGGATTTATGGAGT TTTTGATCATCAACTACCTGCTGCATTGAAGAAGTTACCATTTGACCGTCATCTCTCTACGAAAAATGTTCAGAAAGTTGTCTCAGAAGCTGATGGTTAC CAGCCACATTTAATTGCTCCCGAACAGGGATACAGAAGGCTGATTGATGGATCCATTAGCTTTTTCAAAGGCCCAGCTGAAGCCTCTGTTGATGCTGTGC ATTTTATTTTGAAGGAACTTGTGCGGAAGTCCATAGCCGAAACAGAGGAATTGAAGCGTTTTCCAACGCTCCAGGCTGACATTGCTGCTGCTGCTAATGA ATCCTTGGAAAGGTTCCGTGATGATAGCAGAAAAACAGTTATTCGGCTAGTGGACATGGAGTCTAGCTACTTGACTGTGGAATTTTTCCGTAAACTTCAG CTCGAGCCAGACAAGGCCACAAACCCAAAAGAAAACCCAAATTCATCTGTCCCGGCTGCTGACCGCTATGCTGATTATCACTTCAGGAGGATCGGATCAA ACGTGAATGCTTACATTAACATGGTGTGCGATACATTGAGGAACTCGATCCCAAAGGCTGTCGTTTATTGTCAGGTCCGAGAGGCCAAGAGATCCCTTCT CAATTACTTCTACACTCAAATCGGGAGACGAGAGATGAAAATGCAAAGAGCTCGCAGTAAATCTTCCTTGCTTCGTTTGTCTTCTAATTCCATATCCTGC AAACTTCAAAGATCATCTTGCATTGTTTCTGCAGAAGGAGCAGCTCGGTGCGATGCTGGACGAAGACCCGCAATTGATGGAAAGAAGGACACAGCTCTCG AAAAGGCTGGAACTGTACAAATCGGCCAGGGACGAAATCGATTCAGTTGCTTGGAAATGAGGAATCCAGTGAACAAAAATCTGACTCATGTGATGCCACA TTCAGGTTCTCTCTGA
AA sequence Show only first row Show all	>Lus10029001 pacid=23151862 polypeptide=Lus10029001 locus=Lus10029001.g ID=Lus10029001.BGIv1.0 annot-version=v1.0 MATMESLIGLVNRIQRACTVLGDHGGGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKLEDGRASDYAEFLHAPRKK WTDFAAVRKEIADETDRITGKSKQISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVEDIENMVRSYVEKPNSIILAISPANQDIATSDAIKLA REVDPTGERTFGVLTKIDLMDKGTNCLDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFETSPEYGHLSSKMGAEYLAKLLSKHLETVIR QRIPSIIALINKTIDEINGELDRIGRPIAVDSGAQLYTILELCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSTKNVQKVVSEADGY QPHLIAPEQGYRRLIDGSISFFKGPAEASVDAVHFILKELVRKSIAETEELKRFPTLQADIAAAANESLERFRDDSRKTVIRLVDMESSYLTVEFFRKLQ LEPDKATNPKENPNSSVPAADRYADYHFRRIGSNVNAYINMVCDTLRNSIPKAVVYCQVREAKRSLLNYFYTQIGRREMKMQRARSKSSLLRLSSNSISC KLQRSSCIVSAEGAARCDAGRRPAIDGKKDTALEKAGTVQIGQGRNRFSCLEMRNPVNKNLTHVMPHSGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	1.0	0.9400
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	2.6	0.9079
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	3.3	0.8910
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	3.5	0.9285
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	3.9	0.9206
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	4.5	0.9195
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	4.5	0.8986
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	4.9	0.9191
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	5.3	0.9199
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	8.7	0.8454

Compare expression of checked genes

Lus10029001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.