Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68050 861 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 706 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 645 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G51550 110 / 3e-25 Kelch repeat-containing F-box family protein (.1) AT5G58140 91 / 1e-18 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 79 / 5e-15 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G02710 72 / 4e-13 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT1G18610 71 / 2e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G04420 70 / 3e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT2G36360 66 / 4e-11 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019169 [exp] 1148 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 895 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 888 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 714 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 701 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 696 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 566 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10034827 [exp] 103 / 4e-23 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 103 / 5e-23 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105700 [exp] 889 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 881 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 736 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 727 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G252200 [exp] 123 / 1e-29 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 119 / 2e-28 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 87 / 2e-17 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 86 / 5e-17 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 84 / 2e-16 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.008G031200 [exp] 72 / 4e-13 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029002 pacid=23151733 polypeptide=Lus10029002 locus=Lus10029002.g ID=Lus10029002.BGIv1.0 annot-version=v1.0 ATGGTGTTTTCGCAATTTAATCGAACTTTCGGCCCTTTTACTATCCATCTCCCAGCTGAAAATATCTTCCCTCTACGGCAAGAGAAGGAGGAAATAAAAT CTGCAGCGTCGCCACCTGTCCAACGCCCAGACGCCTCCAGCTACCTCTCGTGTTTACAGAAGAAGAAGCAGAGTTTGAAATCAGAGAAGAAGGAAGCCAT GTTGATTAGGGAAGAAATGGACGAATCCGACGAGAAACTGTACGGTGGCGGAGGAGCTACGCAGAAGAAGCGGAAATGTTCGAAACCGGTCGAAGTAGAA GAGGAGGAAGAAGATGAAGAGGAGCAAGAATTCTCCCACGAAGAAGACTCTGAGCTATCGTTCGATTCGAATCTCTTCTTCTACCCTACGACTCCGACTT CCTTCGTCGTTTCCGATGCTCAGGAGCCCGATTTCCCCATCATCTACGTCAACAAGGTCTTCGAGATCTCCACCGGCTACCGCGCTCATGAAGTCCTCGG CCGCAACTGTACAGGGATCCGCGAGCTCAGAGGCGGCACCCGCTGGTGGATCCAGCCGCTGGTGGATCCAGTGGTTGTTTCCGAGATGAGGAGGTGTATT GACGAAGCTATTGAATTCCAAGGGGAGCTTTTGAATTTCAGGAAGGACGGGACTCCATTGGTGAACAGGTTAAGGCTAATGCCTATCCACGACGATGAAG GTACTATAACACATATAATTGGGATTCAAGTGTTTTTGGAAGCCAACATCGATCTCGATCGCCTTTCGTATCCTGTTTTCAAGGAGAGCTACTACTGTGA GAACGAGTCATCAGCAGCTAGGAGAAATTGTGCTCTTCCTTTAACTGACAATTTCCAGCCTCAGGTTAAAGAGGAATTGTGCAGGATTCTTGAGCTGTCT GACGAAGTTTTGGCTCAGAACATTCTATCGCGGTTGACACCGAGGGATGTTGCATCAATTGGATCAGTGTGTAGGAGGATTCGCCAGCTGACGAAGAACG AACATGTGAGGAAGATGGTTTGCCAGAATTCTTGGGGGAGGGAAGTCACGGGGGCTCTAGAGTCGACGATGATGACGAAGAAGCTTGCTTGGGGGAGGCT GGCTAGGGAGCTGACGACTCTCGAGGCTGCGTGCTGGAGGAAACTGACCGTTGGGGGAGCAGTTGAGCCTTCTCGTTGCAATTACAGTGCGTGTGCAGCT GGTAACAGGCTCGTGTTGTTCGGCGGGGAAGGTGTCGATATGCAGCCCATGGACGACACGTTCGTACTGAATCTTGATGCAGCTAATCCAGCATGGCAGA GGGTGAGTGTGGAATCGTCCCCACCAGGACGGTGGGGCCACACCCTTTCGTCCTTCAATGGTTCTTCTCTCGTGGTGTTTGGTGGATGCGGAAGACAAGG GTTACTCAACGATGTCTTTGTGCTTGACTTGGATGCCAAGCAACCGACTTGGAAAGAAGTCTCGGGAGGAACACCGGCACCCCTTCCGAGGTCTTGGCAT AGCTCCTGCACAATCGAAGGCTCGAAACTCGTCGTGTCCGGTGGATGCACAGATGCAGGAGTACTGCTTAGTGACACCTACTTATTGGATCTCACTACTG AGAAACCAACTTGGAAAGAGGTTCCTACTAAGCGACCACCGCCATCTCGACTGGGACATTCGCTCTCTGTTTATGGCGGGACGAATGTTTTGATGTTTGG CGGTCTGGCCAAGAGCGGTCACTTGCAGTTGAGATCGGGGGATGCATATACTGTCGATCTTGGGGACGAAAGGCCGGAATGGAGGCAACTCGATTGTTCG GCATATATCGGGGGTGGAAACCAAAGCTGTGTGGTTCCGCCTCCCAGACTTGATCATGTTGCGGTTAGCATGCCCTGTGGGAGGATCATAATCTTCGGTG GTTCGATTGCAGGGTTGCATTCTCCTTCGCAGCTTTTTTTGTTGGATCCAGCTGACGAGAAGCCGTCGTGGAGGGCGCTCAGTGTTCCGGGGCAGCCACC GAAATTCGCGTGGGGCCATAGTACTTGCGTAGTTGGAGGGACTAGGGTGCTGGTGTTGGGTGGGCATACAGGGGAGGAATGGATACTTAACGAGTTGCAT GAATTATGCTTGACAACCCGGCAAGACGTAGATGCTTAG
AA sequence Show only first row Show all	>Lus10029002 pacid=23151733 polypeptide=Lus10029002 locus=Lus10029002.g ID=Lus10029002.BGIv1.0 annot-version=v1.0 MVFSQFNRTFGPFTIHLPAENIFPLRQEKEEIKSAASPPVQRPDASSYLSCLQKKKQSLKSEKKEAMLIREEMDESDEKLYGGGGATQKKRKCSKPVEVE EEEEDEEEQEFSHEEDSELSFDSNLFFYPTTPTSFVVSDAQEPDFPIIYVNKVFEISTGYRAHEVLGRNCTGIRELRGGTRWWIQPLVDPVVVSEMRRCI DEAIEFQGELLNFRKDGTPLVNRLRLMPIHDDEGTITHIIGIQVFLEANIDLDRLSYPVFKESYYCENESSAARRNCALPLTDNFQPQVKEELCRILELS DEVLAQNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNSWGREVTGALESTMMTKKLAWGRLARELTTLEAACWRKLTVGGAVEPSRCNYSACAA GNRLVLFGGEGVDMQPMDDTFVLNLDAANPAWQRVSVESSPPGRWGHTLSSFNGSSLVVFGGCGRQGLLNDVFVLDLDAKQPTWKEVSGGTPAPLPRSWH SSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTEKPTWKEVPTKRPPPSRLGHSLSVYGGTNVLMFGGLAKSGHLQLRSGDAYTVDLGDERPEWRQLDCS AYIGGGNQSCVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPADEKPSWRALSVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELH ELCLTTRQDVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	2.6	0.7905
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	3.7	0.7556
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	4.5	0.6751
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	8.8	0.7451
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10009332 [exp]	11.2	0.6997
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10023569 [exp]	11.6	0.6879
AT4G17750	HSF	ATHSFA1A, ATHSF...	ARABIDOPSIS THALIANA CLASS A H...		Lus10023636 [exp]	12.4	0.6516
AT5G50350			unknown protein		Lus10034861 [exp]	14.1	0.6544
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10004660 [exp]	14.4	0.6631
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	15.9	0.7224

Compare expression of checked genes

Lus10029002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.