Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49030 55 / 1e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT2G39415 50 / 2e-07 F-box family protein (.1) AT5G53840 49 / 6e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 48 / 7e-06 F-box/RNI-like superfamily protein (.1) AT5G56400 49 / 1e-05 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G67390 49 / 1e-05 F-box family protein (.1) AT1G60410 47 / 2e-05 F-box family protein (.1) AT5G27750 47 / 3e-05 F-box/FBD-like domains containing protein (.1) AT5G03100 47 / 3e-05 F-box/RNI-like superfamily protein (.1) AT3G59150 47 / 3e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037289 [exp] 275 / 1e-84 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 256 / 3e-81 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029083 [exp] 265 / 9e-81 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034290 [exp] 231 / 5e-69 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10001581 [exp] 220 / 8e-62 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10003695 [exp] 171 / 6e-50 ND / Lus10000650 [exp] 176 / 7e-50 ND / Lus10037261 [exp] 165 / 4e-47 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10034430 [exp] 128 / 3e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 52 / 9e-07 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 51 / 2e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G146500 [exp] 48 / 1e-05 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 48 / 1e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 48 / 2e-05 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 47 / 3e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 46 / 6e-05 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 46 / 6e-05 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G098700 [exp] 45 / 0.0001 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.017G146400 [exp] 45 / 0.0002 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029003 pacid=23151830 polypeptide=Lus10029003 locus=Lus10029003.g ID=Lus10029003.BGIv1.0 annot-version=v1.0 ATGACGTATGGTTCTCAATCAAGCGTGCCTCTACTTCGAGCTCTTGCATGCGACTGCATCGTTGTCAATCATCGTCCTATTGGCTTTTTGTATACTCTCT TCGGAGTCATCCAATACTTTCTTTTCCTTAAGGGAATTTCAAATCTGGCTGGACCATATATTACTCCAGAAACGGAGATGGAAACGGCGGAGAGGAACAC GGCCGTGCAAGTGTGGCCTTCCACGGCCGTGCAAGTGTGGACTTCCACGGCCGACCGTAAGTCATGTTCCTCGAGGCTCGATGAAACTCGTCTTCTTGGA AATATTTTATTGTCATTCCATCCAAAACATTGCTTATACCTCACTTACGGAACAACACAAGTACTTTATTATCAAGGAAGGAAGAAGATGAAGAACAAGA AGGCAAATTCACCCGTGTTTGTGGATCGAATTTCAGAACTACCGGAAGAAATCATCCACCTCATCCTTCAAAGCTTAGACACGCACAACGAGGCGGGGAG AACAAGCATCTTGTCGAGACGATGGCTCAACATCTGGAGCACTTACCCGGTCGTGGAGTTTCAGGATCACAACAAGGATGAGCATATAGAGAAGTTGATG AGCAGGTACGAGAGCTTCGCCGCTGCTACTTCCAAGAGGCTGCTAGCTGTACCGGAATTGCTTTTGGACACCTTCAACATCACGATGGGCCGCCCTTTCG TCTACAAAGATCGTCACTTGTATATGGATGATCAGAATTTAAATAAGTGGCTGCAACAAGGGGAACTTTTGCGGTCATCCCTCGGCAGCAGATCTCCGCT TAATGTTGTGGCTAAAAACTATCTCTCTCGTTTCAGTGGTGGTCATGATCCACTTGATCGTTTTGTTAGAAGATTGTTCATGAACTGTGGCCGCACCAAA TTCCTCGACCTAACAGGTTTTGACCTAAGCGGATTAATGCACAATGTCAGGACTTGTCTGGACAATCTTCAGGAACTCTGTCTGGAAGATGTCCGGGTCA GCGAACAGAGTTTTCCGAGCTGTCTGGCTAATGCTCCTCGTCTCGAGAAATTGAGTTTGAAAAATATTCAAGGAATTCGTACCCTGAATATCTCTGCTTC TAATTTCCCCAGCTTGATATCTCTTTCCTATAGAGAAAATCGCTACGGAGATTGGATGCGACTCCAGCTCAGCTCAGCTCCTCTCCTCAAGACTTTTCGC TACGAAGGCCACTTTGTAAACCTGGATGTAGTAGCTCCGGCTCCGAGTGTAAAATTTGTAGAGTTTAAACTCTATGATCTTGGTCCTCCTCCTGAGGAGG ACGAGAGAAGAGTAGATGAACTGATTCCCAAGTTCCCGCATCTCGAGTCTCTCCACTTGAGAGCAGGAAATTACAACCAAAAGCTAAGGATTTCAGCTCA TACGCTACGGGAACTAACTCTGGCAGACCGATCTCACAAGGCGCTGGCGTTTGAGATTGATGCTCCTAATCTTGTAACACTAACCGTCGACGGCGCCACT TGGCCCAAAACCGATAAATGGGATGTTGTCAAAGTGGCTCCTAGCTGCCGATGCGTATTCGAATGTTCTGTTCTTCGAGGCAGGAGAGAAAAGCTAACGA CAAACAAGATAACAACAAAATGGTTATCGGAGCTGAAGAAGTGTCTCGCGGCACTCGCTACTCGTTTCCCCCACCTGGTTTTCAAGTTGAAATTCCCAAC CACGATAGAGTATATCACCGAGCAAACTAAGACGGAAAATCTCAAGAAATGTCGTAGCAGCTGCAAGTGTTGGCGACACCAGTTTAAAGATGCAAAGATA ACGAGTGTCCCTGTAGATGATGTTTCAACAATCGTTAAGAAATCGGCGACTTATCAATCGTCAGTTGATATGATGTTCCTTATTCGTATTTAA
AA sequence Show only first row Show all	>Lus10029003 pacid=23151830 polypeptide=Lus10029003 locus=Lus10029003.g ID=Lus10029003.BGIv1.0 annot-version=v1.0 MTYGSQSSVPLLRALACDCIVVNHRPIGFLYTLFGVIQYFLFLKGISNLAGPYITPETEMETAERNTAVQVWPSTAVQVWTSTADRKSCSSRLDETRLLG NILLSFHPKHCLYLTYGTTQVLYYQGRKKMKNKKANSPVFVDRISELPEEIIHLILQSLDTHNEAGRTSILSRRWLNIWSTYPVVEFQDHNKDEHIEKLM SRYESFAAATSKRLLAVPELLLDTFNITMGRPFVYKDRHLYMDDQNLNKWLQQGELLRSSLGSRSPLNVVAKNYLSRFSGGHDPLDRFVRRLFMNCGRTK FLDLTGFDLSGLMHNVRTCLDNLQELCLEDVRVSEQSFPSCLANAPRLEKLSLKNIQGIRTLNISASNFPSLISLSYRENRYGDWMRLQLSSAPLLKTFR YEGHFVNLDVVAPAPSVKFVEFKLYDLGPPPEEDERRVDELIPKFPHLESLHLRAGNYNQKLRISAHTLRELTLADRSHKALAFEIDAPNLVTLTVDGAT WPKTDKWDVVKVAPSCRCVFECSVLRGRREKLTTNKITTKWLSELKKCLAALATRFPHLVFKLKFPTTIEYITEQTKTENLKKCRSSCKCWRHQFKDAKI TSVPVDDVSTIVKKSATYQSSVDMMFLIRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49030			FBD, F-box and Leucine Rich Re...		Lus10029003 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	24.6	0.7672
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	50.1	0.7168
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10018108 [exp]	56.6	0.7468
AT1G55170			unknown protein		Lus10037647 [exp]	81.0	0.7352
					Lus10007078 [exp]	159.9	0.6822
AT1G62310			transcription factor jumonji (...		Lus10002052 [exp]	174.3	0.6785
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	252.4	0.6897

Compare expression of checked genes

Lus10029003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.