Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10850 397 / 1e-141 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 189 / 6e-59 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 187 / 9e-58 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 164 / 3e-49 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT1G53580 83 / 2e-18 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029086 [exp] 488 / 1e-177 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10034259 [exp] 486 / 2e-176 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 191 / 1e-59 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 189 / 2e-58 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 150 / 6e-44 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 134 / 7e-38 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10020760 [exp] 72 / 1e-14 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 55 / 2e-08 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062600 [exp] 424 / 4e-152 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 181 / 2e-55 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 172 / 4e-52 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.005G204800 [exp] 82 / 3e-18 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 76 / 6e-16 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029004 pacid=23151748 polypeptide=Lus10029004 locus=Lus10029004.g ID=Lus10029004.BGIv1.0 annot-version=v1.0 ATGAAGATTTTCCAGGTTCCTTGCTTGGAAGACAACTACGCTTACCTGATTATCGACGAAGCAACTAGAGAAGCTGCAGTGGTGGATCCTGTCGAGCAGG AGAAGCTGGTGAAGGCTGCTAATGAACACGGTGTTCAAATCAAGCTTGTTCTCACCACTCATCATCACTGGCATCATGCTGGGGGGAACGAGAAATTGAA GCAGTTAATCCCTGAGATCAAAGTCTATGGAGGTTCTCTGGACAAGGTCAAGGCTTGTACTGATGCAGTTGCTAATGGTGACAAGATATCTCTTGGTGCT GGCTCTTCATACTCCTTGGTAAGACACACAAAAGGTCACATAAGCTACTATGTCACCGGCAAGGAGGGAGAAGACGGAGTTGTTTTCACCGGTGACACCC TGTTTGTAGCTGGCTGTGGAAAGTTCTTCGAGGGTACGGCAGAGCAGATGCACCAATCCTTGTGTGTAACACTGGCTTCACTGCCAAAGCCTACTCAAGT GTACTGTGGCCATGAGTACACGGTGAAGAATCTACAGTTTGCACAAACGGTGGAACCGGACAATGAGAAGATTCGGCAGAAGTTAATATGGGCTCAGCAG CAAAGGCAGGCAGGAGTTCCCACCATCCCCTCAACTATCGAGGAGGAAATGGAGACTAACCCGTTTATTCGAGCCGATCTTCCAGATCTCCAGTCGAAAG TTGGGTGCAAATCTGGAGTGGAAGCTCTGGGGAAGATAAGGGAGATGAAGGATAGCTGGAGTGGCTAA
AA sequence Show only first row Show all	>Lus10029004 pacid=23151748 polypeptide=Lus10029004 locus=Lus10029004.g ID=Lus10029004.BGIv1.0 annot-version=v1.0 MKIFQVPCLEDNYAYLIIDEATREAAVVDPVEQEKLVKAANEHGVQIKLVLTTHHHWHHAGGNEKLKQLIPEIKVYGGSLDKVKACTDAVANGDKISLGA GSSYSLVRHTKGHISYYVTGKEGEDGVVFTGDTLFVAGCGKFFEGTAEQMHQSLCVTLASLPKPTQVYCGHEYTVKNLQFAQTVEPDNEKIRQKLIWAQQ QRQAGVPTIPSTIEEEMETNPFIRADLPDLQSKVGCKSGVEALGKIREMKDSWSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	0	1
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	1.0	0.9289
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	1.4	0.9234
AT1G67390			F-box family protein (.1)		Lus10013664 [exp]	2.6	0.8860
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	4.0	0.8941
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	6.0	0.8969
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	12.3	0.8839
AT1G76480			unknown protein		Lus10006035 [exp]	14.0	0.8941
					Lus10018313 [exp]	16.4	0.8742
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	17.0	0.8937
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	18.3	0.8718

Compare expression of checked genes

Lus10029004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.