Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 462 / 3e-154 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 337 / 1e-105 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 326 / 6e-102 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 308 / 1e-94 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 301 / 2e-92 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 263 / 8e-78 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G64210 257 / 3e-76 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 253 / 3e-74 RKL1 receptor-like kinase 1 (.1) AT5G53320 250 / 1e-73 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 251 / 2e-73 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019113 [exp] 498 / 3e-168 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 498 / 6e-168 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034257 [exp] 466 / 2e-160 AT5G58300 306 / 7e-100 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 359 / 2e-114 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 358 / 4e-114 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 321 / 1e-99 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 319 / 7e-99 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 308 / 1e-94 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 295 / 1e-90 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139200 [exp] 514 / 1e-174 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 392 / 1e-126 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 360 / 1e-114 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 350 / 5e-111 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 316 / 7e-98 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 290 / 2e-88 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 290 / 3e-88 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 285 / 3e-86 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 281 / 8e-85 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 268 / 6e-80 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029005 pacid=23151825 polypeptide=Lus10029005 locus=Lus10029005.g ID=Lus10029005.BGIv1.0 annot-version=v1.0 ATGACCACCTTCTTCCTACTCATCCTTCTTCTGACGATCTTTTCCCGCCACTCAGCTCACTCCGACTTAAACTCCGACGCCAAATCCCTCCTAACCTTCG CCTCCTCCGTCCCACACATAACCAGAAAGCTCAACTGGAACTCCTCCACACCCGTCTGCACCTCCTGGGTCGGAGTCACCTGCGACCCGACCCATACCCG CGTCGTCGCCCTCCGACTCCCCGGCGTCGGACTTTACGGTAACCTTCCTCCGAACACCATCGGAAAACTCACCTCCCTCAGAGTCCTTAGTCTAAGATCC AACGGCCTCTCCGGCCCAATTCCACCGGACATCCTATCCATCCCGTCACTCGAATTCCTCTACCTCCAGGGAAACAATTTCTCCGGCGAATTCCCCACCT CCGTCTCGCCGAAATTGACCGCCGTGGATCTGTCATTCAACTCGTTTCCGGGACGGATCCCGGGCCCAATTCCACCGGACATCCTATCCATCCCGTCACT CGAATTCCTCTACCTCCAGGGAAACAATTTCTCCGGCGAATTCCCCACCTCCGTCTCGCCGAAATTGACCGCCGTGGATCTGTCATTCAACTCGTTTTCG GGTCGGATCCCGGGCTCGGTTCAAAACCTGACCCGACTCGCTGCTCTGTACCTCCAGAACAATTCGATCACCGGAGACTTGAAACCCTTGGAGCAATTGC CGAATCTGAAGCTGCTGAATCTCAGCTTCAACTACCTTGCCGGCGAAATCCCGCCGCCGTTGCAAAGATTCCCCTCCCTTGCCTTCGTCGGTAACGCCTT GCTCTGCGGGCAACCCCTCAAACGCTGCTCGGATTCCGATTCAAACTCGAATTATTCGAATTCGAATCCGCCAATTCCCGATTCGAATCCGAATCCTCTC GCCGCCGGAGGTGGAAAGAAGAGGCGCGGTACCAATTTCGTAATAGCGATCTTAGTCGGAGCAGGGGTAGTTCTACTGGCGGCGATAATCGCCGCCGTAG TGGTTTGTTTAAAAAAGAGAGGCGGGGTCGCTGGAGTGGTCGGCCGGAGGAAAGGGAAAGAAGGGGGGAACGACAAGTCGAAGTCGTTTGGGAGCGGAGT GCAGGCGGCGGAGAGGAACAAGCTGTTCTTCTTCGATGGCGGAGGCCACAGATTCGATTTGGAGGATCTGCTGAGGGCGTCGGCGGAGGTGCTGGGAAAG GGGAGCTTCGGGACGACGTACAAGGCGGTGTTGGAAGACGGCAGCTGCGTGGTGGTGAAGCGGCTGAGGGAAGTGATGGTGGTGGGGAAGAAAGAGTTCG AGTTGCAGATGGAAGGGATCGGAAAGGGTGAGAGGCAGCATCCTAACGTTGTGCCGTTGAAGGCTTATTACCATTCGAAAGATGAGAAGCTTCTGGTTTA TGATTTCTTCGCCGCCGGCAGCTTTTCCTCCCTCTTACATGGAAACAGGGGAGGGGAAGGAGGAAACAGAACACCGCTAGGATGGGATCAGAGGATGAAG ATAATCATCGGAGCAGCCAAAGGAATCGCCCACATTCACTCCTTAAGCGACGGCGGATCAGCCGGCACTACCGCCGCCGGAAATGCAAAGTCGGTGCACG GGAACATAAAGGCAACGAACGTCCTCCTAACACCCGACCTCGACGGCTGCATCTCCGACGTGGGACTAGCTCCTCTGATGAACTTCCCGGCCACCGCATC CCGAACAATCGGGTACAGAGCTCTTTTTTCAGAGCTCAACGAGACCCGGAAGCCCAGCCAGAAATCCGACGTCTACAGCTTCGGAGTCCTCCTGCTGGAA GCTCTGACCGGGAAAGCCCCGATGAGATCAGGAGGAACGACGGCGTGCGACGAGGTGGTGGATCTGCCGAGGTGGGTGAGGTCGGTGGTGAGGGAGGAAT GGACGGCGGAGGTTTTCGATTCGGAGCTGGTGACCGGCGGCCGGAATGTGGAAGAGGAAATGGTCCAGATGCTGCAGATTGCTCTGGCGTGCGTGGCCAG GGCCTCCGAGATGCGTCCGACGATGGATGAAGTCGTGAAGCTGATCGAGGAAACTGTCCGGCCGAACGGGTCGGAGAGCAGGAAGAGTGGGAATAGTAGC AATGCCGCCGCCGCCGATGACCAGATGAGGTCGTTGTCGGAGGTCGATACGCCGTCGTCTAATGTCCCGACTCCGCCACATGTATGA
AA sequence Show only first row Show all	>Lus10029005 pacid=23151825 polypeptide=Lus10029005 locus=Lus10029005.g ID=Lus10029005.BGIv1.0 annot-version=v1.0 MTTFFLLILLLTIFSRHSAHSDLNSDAKSLLTFASSVPHITRKLNWNSSTPVCTSWVGVTCDPTHTRVVALRLPGVGLYGNLPPNTIGKLTSLRVLSLRS NGLSGPIPPDILSIPSLEFLYLQGNNFSGEFPTSVSPKLTAVDLSFNSFPGRIPGPIPPDILSIPSLEFLYLQGNNFSGEFPTSVSPKLTAVDLSFNSFS GRIPGSVQNLTRLAALYLQNNSITGDLKPLEQLPNLKLLNLSFNYLAGEIPPPLQRFPSLAFVGNALLCGQPLKRCSDSDSNSNYSNSNPPIPDSNPNPL AAGGGKKRRGTNFVIAILVGAGVVLLAAIIAAVVVCLKKRGGVAGVVGRRKGKEGGNDKSKSFGSGVQAAERNKLFFFDGGGHRFDLEDLLRASAEVLGK GSFGTTYKAVLEDGSCVVVKRLREVMVVGKKEFELQMEGIGKGERQHPNVVPLKAYYHSKDEKLLVYDFFAAGSFSSLLHGNRGGEGGNRTPLGWDQRMK IIIGAAKGIAHIHSLSDGGSAGTTAAGNAKSVHGNIKATNVLLTPDLDGCISDVGLAPLMNFPATASRTIGYRALFSELNETRKPSQKSDVYSFGVLLLE ALTGKAPMRSGGTTACDEVVDLPRWVRSVVREEWTAEVFDSELVTGGRNVEEEMVQMLQIALACVARASEMRPTMDEVVKLIEETVRPNGSESRKSGNSS NAAAADDQMRSLSEVDTPSSNVPTPPHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	1.4	0.9410
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	1.7	0.8795
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	2.2	0.8686
AT1G11915			unknown protein		Lus10038443 [exp]	2.4	0.8873
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	4.9	0.8345
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	6.0	0.8618
AT1G11915			unknown protein		Lus10023362 [exp]	6.9	0.8718
					Lus10029150 [exp]	7.1	0.8280
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	9.5	0.8470
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	11.3	0.8551

Compare expression of checked genes

Lus10029005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.