Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 82 / 4e-17 Ankyrin repeat family protein (.1) AT4G03500 62 / 3e-10 Ankyrin repeat family protein (.1) AT1G07710 58 / 4e-09 Ankyrin repeat family protein (.1) AT3G13950 56 / 6e-09 unknown protein AT4G13266 56 / 7e-09 unknown protein AT4G10720 55 / 5e-08 Ankyrin repeat family protein (.1.2) AT5G54620 54 / 1e-07 Ankyrin repeat family protein (.1) AT1G14480 54 / 1e-07 Ankyrin repeat family protein (.1.2) AT5G02620 53 / 2e-07 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 51 / 7e-07 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034256 [exp] 427 / 1e-147 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10029008 [exp] 266 / 1e-84 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10034255 [exp] 243 / 2e-76 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029007 [exp] 240 / 1e-74 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029089 [exp] 142 / 2e-39 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10029088 [exp] 103 / 2e-26 AT3G13950 62 / 5e-12 unknown protein Lus10041537 [exp] 61 / 4e-10 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10003308 [exp] 58 / 6e-09 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10038609 [exp] 57 / 6e-09 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 97 / 3e-22 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 88 / 5e-19 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 87 / 2e-18 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 74 / 1e-15 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.012G113800 [exp] 67 / 5e-12 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 62 / 2e-10 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 62 / 2e-10 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 60 / 1e-09 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 59 / 2e-09 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.011G133400 [exp] 58 / 5e-09 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029006 pacid=23151697 polypeptide=Lus10029006 locus=Lus10029006.g ID=Lus10029006.BGIv1.0 annot-version=v1.0 ATGGCCAGGGAAGTGGACTCTTCAAATTCTACACCGCTTCACTTGGCTGCTTCCCCTGGACATACAGAGATCGTCAGGATTCTTCTGGGAGTGGGAACGG AATCTTGCTTGGTTCGCGATGAAGATGGTCGGATCCCTCTCCATCTGGCTGTGATTCGAGGCAGAGTTGGTATTGTTAGGGAGCTGGTCCGGGCTAGGCC GGAATCTGTGAAGGAGAAACTGGATGGTGATACTGTTTTGCATCTGTATTGCCTTGAGCTGTATCCTAAAGACTACAAGAGCCAGCGAATTCGAAACATT CTCGTCAAGGCAGCAGGAGGCGTAATTCGTTCTCGATCACAGTATCATCCGACACTTCCTTCTTATAACCTTGTTCCATTGCCTGCACAACCACCAAAGA GAAGAAAGACGAGAAGAAACTGCTTCACATCAATTTGCAGAGAGTTCAAGTATTTCCTAGCGTACGACAGCAACTGGCTGGACGAGATGAAAGAAACAGT GCTGTTAGTCGCCACCATCATAGCGTCCATGAGCTTCCAAGCCGCGACCAACCCTCCCGGCGGAGTCTGGGACGAGAACAAGACCAGCTCCGATTCCGGC AAACTCTGCAGCAACAACTCAACCAGTGTCTGTAAAGCCGGAACTTCGGTGCTGGCTTACGGAGACCGGCCGGATTTGCTTAATTTGTTCGTTGCGTTGA GTCGCGTTCGGGGCGTCCCTGGGGATCATACTTCTGATCGTCGGCGGGTTTCCGATCAAGAGGAACAAGCTGGTGACGTGGATGCTGACGCAATCTGTGT GTATAGCTCTCACGTTTATGACGCTAGCGTTTGTGGTTGCTGGTTATTCCGGTTCAACCGGTTTTGGTTAATGCGGGTGGTTATTCCGGGTCATACGATG CTGATTGTTGTTGCTCTGTGTTGGGGGCTTTTGCTGATTGTGGTGCTTAATCTGCTCCACACGTTCCGGTTCGCTGTCTGGGTTTTCGGAAAGATGAGTC GGCTTGTGGTTTGGGCTTACGGGAAGTTGAGTAAGGTGTTAGGGTGTTGTTGCAGTAGCAACAGGGGAGGGGAGCTGGTTTAG
AA sequence Show only first row Show all	>Lus10029006 pacid=23151697 polypeptide=Lus10029006 locus=Lus10029006.g ID=Lus10029006.BGIv1.0 annot-version=v1.0 MAREVDSSNSTPLHLAASPGHTEIVRILLGVGTESCLVRDEDGRIPLHLAVIRGRVGIVRELVRARPESVKEKLDGDTVLHLYCLELYPKDYKSQRIRNI LVKAAGGVIRSRSQYHPTLPSYNLVPLPAQPPKRRKTRRNCFTSICREFKYFLAYDSNWLDEMKETVLLVATIIASMSFQAATNPPGGVWDENKTSSDSG KLCSNNSTSVCKAGTSVLAYGDRPDLLNLFVALSRVRGVPGDHTSDRRRVSDQEEQAGDVDADAICVYSSHVYDASVCGCWLFRFNRFWLMRVVIPGHTM LIVVALCWGLLLIVVLNLLHTFRFAVWVFGKMSRLVVWAYGKLSKVLGCCCSSNRGGELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10029006 [exp]	0	1
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	4.6	0.8963
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10031760 [exp]	4.8	0.8364
					Lus10033284 [exp]	8.0	0.8815
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10014491 [exp]	16.9	0.6793
AT3G19550			unknown protein		Lus10002115 [exp]	19.6	0.8766
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	22.3	0.8461
AT3G19550			unknown protein		Lus10002114 [exp]	22.4	0.8765
					Lus10038743 [exp]	25.4	0.8756
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	25.7	0.8613
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10035974 [exp]	28.0	0.8730

Compare expression of checked genes

Lus10029006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.