Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 128 / 5e-32 Ankyrin repeat family protein (.1) AT4G10720 112 / 2e-26 Ankyrin repeat family protein (.1.2) AT5G15500 111 / 3e-26 Ankyrin repeat family protein (.1.2) AT1G14500 96 / 6e-21 Ankyrin repeat family protein (.1) AT1G14480 96 / 6e-21 Ankyrin repeat family protein (.1.2) AT5G54620 94 / 2e-20 Ankyrin repeat family protein (.1) AT3G12360 93 / 6e-20 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G54610 90 / 4e-19 ANK ankyrin (.1) AT3G09550 85 / 3e-17 Ankyrin repeat family protein (.1) AT4G13266 77 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029008 [exp] 568 / 0 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10034255 [exp] 505 / 5e-176 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10034256 [exp] 504 / 3e-175 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10029089 [exp] 370 / 8e-126 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10029006 [exp] 170 / 5e-48 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1) Lus10029088 [exp] 158 / 1e-45 AT3G13950 62 / 5e-12 unknown protein Lus10041537 [exp] 148 / 5e-39 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10037894 [exp] 124 / 7e-30 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 102 / 7e-23 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 213 / 5e-63 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 189 / 3e-54 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 186 / 7e-53 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.012G113800 [exp] 154 / 2e-41 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 153 / 7e-41 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 143 / 2e-37 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.018G050600 [exp] 124 / 5e-33 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.018G042200 [exp] 125 / 1e-30 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.017G006800 [exp] 101 / 2e-22 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.001G187600 [exp] 97 / 4e-21 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029007 pacid=23151832 polypeptide=Lus10029007 locus=Lus10029007.g ID=Lus10029007.BGIv1.0 annot-version=v1.0 ATGGCGATGAAACACTCTTCCAAGGCTGATGATACATCAGCACTTTACGAAGTAGCAATGACAGGCAACACATCAACCCCCCAGAAATTAATCCAGACAG ATATCAACTCTTCCAAAGCCGATGATATATCAGCACTTTACGAAGCAGCAATGACAGGCAACACATCAACCCTCCTGAAATTAATCCAGAGTGACCCTCT GATTCTCAGGAGATCCACAGTGCTCTCTTCCTTCAGCGAAACCCCCTTGCACATCTCGGTCCTGGCGGGCCACGTAGATTTCACCAGGGAGATCCTGCAG CTCCAGCATCAGGATCCTGATGCAACAATGGCCATGGAAGTGGACTTTTCAAATTCCACACCACTTCACCTGGCTGCTGTTGCTCCTGGACATACGGAGA TCGTCAGGATTCTGCTGAGTAGTGTGGGGACGACTGATGCTTGTTTGGTTCGCAACGAAGATGGTCGAATCCCTCTTCATCTGGCTGTGATTCGAGGCCG AGTTGGCATCGTGAGGGAGCTGTTCCTGGCGAGGCCAGAGTCTGTTCTGGAGGAACTGGATGGTGACACGGTTCTGCACCTGTGTGTAAAGCATAATCAT TTGGAGACGTTGAAGTTGCTGGTGGAAATGATTGTCGGAAAGGAATCGTTGCTGGCGTCCATCATCTGGTTGGGGAATCGAGATGGGAACACCGTTTTGC ATCTTGCTGTCATGCTCAAGCTGGTTCAGACGACAAGTTACTTGGCTTCACTGCCTAACATTGGAGGAGACTCAGCACTGAACTTGTTGAATGGACATGG CTTAACACCCTTAGATTGCCTTGAGCTGTATCCTAAAGACTACAAGAGCCAGCAAATTCGAAACCTTCTCGTAGAGGCAGGAGGAGGAGATGGCCGAGCA CAGGATCATCGGACACCTTTTAACCTTGTTACATTGCCATGTGAAGAAAATGCACCAATACCACCAAGGACGAGTGAATCAATTTATAGACGGTTGCATA GATATACGGGGTACGACACCGACTGGGAGGAAGGAGATTTGAAAGAAATAGTCCTAATAGTCGCCACCATTATAGCATCCATGAGTTTCCAAGCCATAAC CAACCCACCGGGTGGAGTCTGGTCAGAGAACAGGACAAGCTCTTTAGAAGGTGTAGGCTGCAGCTCAACAAACGTCTGTAAAGCTGGAACTGCAGTGCTG TCTTATGGAGATTATTCAAAAATTATGGGTACTTTTTTGACATGCAACACCTTCGCATTTGGTGCATCTCTGGGGATCATCATTTTTATCCTCACCGGGG TCCCAATGAAGAATGCCTGGGTACTCACCCAAGGTTTATGCTTTGCTACCACCTTTATGGTATTTGCGTTTGCAAATGCTCGACAACTGGTTGCTCCACT TCATACATTCATGTTCATTGAGGTGTTATGGTTTGCTATTCCGGCATTTTGGTTTCTGGGTATTATGGTGATTCTACTGCTCGACTCTATTCGATTCGTG ATCTGGGGTTTAAGGAAGATTCGAAGAGCACTGGGGTATTGTTACAGCACGGGAGGGGAGCTGCTGGTTTAA
AA sequence Show only first row Show all	>Lus10029007 pacid=23151832 polypeptide=Lus10029007 locus=Lus10029007.g ID=Lus10029007.BGIv1.0 annot-version=v1.0 MAMKHSSKADDTSALYEVAMTGNTSTPQKLIQTDINSSKADDISALYEAAMTGNTSTLLKLIQSDPLILRRSTVLSSFSETPLHISVLAGHVDFTREILQ LQHQDPDATMAMEVDFSNSTPLHLAAVAPGHTEIVRILLSSVGTTDACLVRNEDGRIPLHLAVIRGRVGIVRELFLARPESVLEELDGDTVLHLCVKHNH LETLKLLVEMIVGKESLLASIIWLGNRDGNTVLHLAVMLKLVQTTSYLASLPNIGGDSALNLLNGHGLTPLDCLELYPKDYKSQQIRNLLVEAGGGDGRA QDHRTPFNLVTLPCEENAPIPPRTSESIYRRLHRYTGYDTDWEEGDLKEIVLIVATIIASMSFQAITNPPGGVWSENRTSSLEGVGCSSTNVCKAGTAVL SYGDYSKIMGTFLTCNTFAFGASLGIIIFILTGVPMKNAWVLTQGLCFATTFMVFAFANARQLVAPLHTFMFIEVLWFAIPAFWFLGIMVILLLDSIRFV IWGLRKIRRALGYCYSTGGELLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	0	1
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	3.5	0.8996
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	6.2	0.8960
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	8.5	0.8418
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	9.2	0.8420
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	9.3	0.8831
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	10.2	0.8488
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	22.9	0.8377
AT5G53020			Ribonuclease P protein subunit...		Lus10018117 [exp]	30.3	0.7641
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	30.9	0.8036
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	33.1	0.8014

Compare expression of checked genes

Lus10029007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.