Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 115 / 1e-27 Ankyrin repeat family protein (.1) AT4G10720 112 / 1e-26 Ankyrin repeat family protein (.1.2) AT5G15500 108 / 3e-25 Ankyrin repeat family protein (.1.2) AT5G54620 100 / 1e-22 Ankyrin repeat family protein (.1) AT1G14480 99 / 3e-22 Ankyrin repeat family protein (.1.2) AT4G13266 92 / 6e-21 unknown protein AT3G13950 89 / 3e-20 unknown protein AT5G54610 88 / 1e-18 ANK ankyrin (.1) AT5G54710 88 / 2e-18 Ankyrin repeat family protein (.1) AT1G34050 87 / 6e-18 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034256 [exp] 606 / 0 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10034255 [exp] 578 / 0 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029007 [exp] 559 / 0 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029089 [exp] 362 / 4e-123 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10029088 [exp] 214 / 4e-67 AT3G13950 62 / 5e-12 unknown protein Lus10029006 [exp] 191 / 6e-56 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1) Lus10041537 [exp] 134 / 3e-34 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10037894 [exp] 124 / 3e-30 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 99 / 1e-21 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 205 / 3e-60 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 197 / 3e-57 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 195 / 4e-56 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.012G113800 [exp] 145 / 2e-38 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 139 / 4e-36 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.018G050600 [exp] 125 / 2e-33 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.018G042200 [exp] 129 / 9e-32 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.013G017254 [exp] 123 / 2e-30 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 90 / 9e-19 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 87 / 6e-18 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10029008 pacid=23151688 polypeptide=Lus10029008 locus=Lus10029008.g ID=Lus10029008.BGIv1.0 annot-version=v1.0 ATGGAGATAACACTAACACACCCTTCCTCCAAGGCCGACGATGCATCGGTCCTTTACGAAGCAGCAATGGCAGGTGACACCTCGACCCTCCACGGGTTAA TCTCTCGAGACACCCTGATTCTGAAGAGATCCAGGCTCTCGTCCTTCAGCGAAACCCCCTTGCACATCTCGGTCCTGGCCGGCCATGTCAATTTCACCAG GGAGATCCTGCATCAGGATCCTGAAATGGCCATGGAAGTGGACTCTACCAATTCCACACCGCTTCACTTGGCTGCTGTTGCCCCTGGCCCCGATACAGAG ATCGTCAGGATTTTGCTGGGCGTGGGGGAGGATGCCTGCTTGGTTCGCGACGAAGATGGTCAGATCCCTCTCCATCTGGCTGTGATTCGAGGCCGAGTTG GCATCGTCCATCAGCTGGTCCTGGCGAGGCGGGAGTCTGTGCTGGAGAATCTGGATGGTGACACTGTCCTGCACCTGTGTGTAAAGTACAATCATTTGGA GGTTTTGAAGGTGCTGGTGGACATGATTAATGGTGATAAATTGTTGTCGTCGATTATGTGGTTGGGGGACCAGGATGGGAACACTGTTTTGCATCTAGCT GTCATGTTCAAGCACGTTCAGACGACAAGTTACTTGGCTACACTACCTAACATGGGAGGAGCATCAGCACTGAACTTGTTGAATGGACATGGCTCAACAC CCTTAGATTGCCTTGAGCTGTATCCTAAAGACTGCAAGAGCCAGCGAATTCGAAACCTCCTAGTCGAGGCAGCAGGAGGTGCAATTCCTCGTTCTCGATC TCAGGATCGCCCGAAACCTTCTTACCTTGTTCCATTCCCAGCATCCAAAGAAGAAGCACCACCACCACCAACGAAGAGTAAAAAAAACAAGTCATGCTGC AAATCAATGGGCAGAAAGATCAAGTCTTGTCTTGCATACGACAACAGCTGGCTGGAAAAGAAGAAAGATACGGTACTCTTAGTAGCCACCATCATAGCAT CCATGAGTTTCCAAGCCGCCACCAACCCGCCAGGTGGCGTATGGTCGGAAAACAGGACAAGCCCAGAGTTTGGCAGACTCTGCAACAGCACGACAAGCAT CTGTAAAGCCGGAACTGCAATGGTGGCTTATGGAGATAACCCACATTTGCTGGAGTGGTTTGTGTCATGCAACACGGTTGCATTCGGCGCATCTTTGGGG ATCATCCTTCTGACCGTCGGCGGGTTCCCGATTAAGAAGAACAAGTTCATGGCGTGGATACTGACGCAAGCTATATGCATGGCGCTGACGTGTATGACGC TGGCATTTGTGTTTGCTGGAATGCTGGTTATTCCATATGAACACGATACAACCCTGTTTGCTATTGTGTATTGGGTGCTTTTTCTGTTCGTTTGGATTCT GTTGATTATGGTGATTAGCCTGCTCGACTCGCTTCGGTTCGTGATCTGGGTTTACAGCAGGCTGCGTAGGATTGGAAGAGCCGTGGGGTGTTCTTGTTGC AGCAGGGGAAAGGAGTTGGTTTAG
AA sequence Show only first row Show all	>Lus10029008 pacid=23151688 polypeptide=Lus10029008 locus=Lus10029008.g ID=Lus10029008.BGIv1.0 annot-version=v1.0 MEITLTHPSSKADDASVLYEAAMAGDTSTLHGLISRDTLILKRSRLSSFSETPLHISVLAGHVNFTREILHQDPEMAMEVDSTNSTPLHLAAVAPGPDTE IVRILLGVGEDACLVRDEDGQIPLHLAVIRGRVGIVHQLVLARRESVLENLDGDTVLHLCVKYNHLEVLKVLVDMINGDKLLSSIMWLGDQDGNTVLHLA VMFKHVQTTSYLATLPNMGGASALNLLNGHGSTPLDCLELYPKDCKSQRIRNLLVEAAGGAIPRSRSQDRPKPSYLVPFPASKEEAPPPPTKSKKNKSCC KSMGRKIKSCLAYDNSWLEKKKDTVLLVATIIASMSFQAATNPPGGVWSENRTSPEFGRLCNSTTSICKAGTAMVAYGDNPHLLEWFVSCNTVAFGASLG IILLTVGGFPIKKNKFMAWILTQAICMALTCMTLAFVFAGMLVIPYEHDTTLFAIVYWVLFLFVWILLIMVISLLDSLRFVIWVYSRLRRIGRAVGCSCC SRGKELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	2.2	0.8982
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	2.4	0.8783
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	4.0	0.8803
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	4.9	0.8867
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	5.5	0.8785
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	5.7	0.8824
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	7.9	0.8667
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	8.9	0.8475
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	9.3	0.8153
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	10.6	0.8717

Compare expression of checked genes

Lus10029008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.