Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 244 / 3e-82 RmlC-like cupins superfamily protein (.1) AT5G39110 243 / 5e-82 RmlC-like cupins superfamily protein (.1) AT5G39130 243 / 7e-82 RmlC-like cupins superfamily protein (.1) AT5G39160 243 / 9e-82 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 243 / 1e-81 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39150 237 / 2e-79 RmlC-like cupins superfamily protein (.1) AT5G39120 236 / 4e-79 RmlC-like cupins superfamily protein (.1) AT5G39180 236 / 7e-79 RmlC-like cupins superfamily protein (.1) AT4G14630 234 / 3e-78 GLP9 germin-like protein 9 (.1) AT5G38940 227 / 2e-75 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026962 [exp] 376 / 3e-134 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 375 / 8e-134 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030048 [exp] 374 / 3e-133 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 368 / 4e-131 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 357 / 1e-126 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 326 / 1e-114 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 326 / 2e-114 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 321 / 1e-112 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 321 / 2e-112 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162932 [exp] 303 / 9e-106 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 303 / 1e-105 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 299 / 4e-104 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 297 / 3e-103 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 297 / 3e-103 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 288 / 2e-99 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 285 / 2e-98 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464000 [exp] 277 / 3e-95 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 276 / 6e-95 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 266 / 1e-90 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10029010 pacid=23151798 polypeptide=Lus10029010 locus=Lus10029010.g ID=Lus10029010.BGIv1.0 annot-version=v1.0 ATGGCGAATGATCACTCTCTTATGTCCGCCTTATTGCTAGCGGTAGCTCTCGCGTTCTGTTATCTCGCCTCTGCCGCTGACCCCTCTCCCCTTCAGGACT TCTGTGTGCCCGATTTGACCAACCAAGTGAGAATGAATGGATTTGCTTGCAAGAATCCTGCAACGGTCTCAGCAAGCAATTTCTCCTTCAGCGGGCTCCA CAACCCGGGGAACACAGGCAATGCGGTGGGATCTGTTGTGACCCCGGTCACAGTGTCTCAGATCCCCGGCCTCAACACATTGGGAATCTCTATGGTGCGT ATCGACTATGCTCCATGGGGAATTGGTTCTCCTCACACTCATCCACGGGCCACTGAGGTGCTGACGGTCATCGAGGGCACTTTGGAAGTTGGGTTTGTCA CGTCAAACCCAGAGAATCGTCTCATTTCCAAGATTCTTCAAAATGGTGATGTGTTTGTCTTTCCGATTGGGTTGATTCACTTCCAGCGAAATGTTGGACA TGAAAATGCAGTGGCGATTGCTGCCTTGAGCAGTCAGAACCCGGGAGTCATCACTATTGCAAACTCTGTATTTGGCTCGAAGCCTGATATTGTGACCGAC ATTCTTGCCAAGGCATTCCAAGTGGATAAGAACATTGTCGAGAAGCTCCAATGGAATTTCTAG
AA sequence Show only first row Show all	>Lus10029010 pacid=23151798 polypeptide=Lus10029010 locus=Lus10029010.g ID=Lus10029010.BGIv1.0 annot-version=v1.0 MANDHSLMSALLLAVALAFCYLASAADPSPLQDFCVPDLTNQVRMNGFACKNPATVSASNFSFSGLHNPGNTGNAVGSVVTPVTVSQIPGLNTLGISMVR IDYAPWGIGSPHTHPRATEVLTVIEGTLEVGFVTSNPENRLISKILQNGDVFVFPIGLIHFQRNVGHENAVAIAALSSQNPGVITIANSVFGSKPDIVTD ILAKAFQVDKNIVEKLQWNF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	3.2	1.0000
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	3.5	1.0000
					Lus10003840 [exp]	5.5	1.0000
					Lus10012429 [exp]	5.9	1.0000
					Lus10005396 [exp]	6.3	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	7.0	1.0000
					Lus10022573 [exp]	7.7	1.0000
					Lus10007179 [exp]	8.5	1.0000
					Lus10006661 [exp]	8.9	1.0000
					Lus10021548 [exp]	9.8	1.0000

Compare expression of checked genes

Lus10029010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.