Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10870 292 / 2e-99 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT4G16690 216 / 8e-70 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT5G58310 205 / 2e-65 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT1G33990 175 / 2e-52 ATMES14 methyl esterase 14 (.1) AT3G29770 170 / 2e-50 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G69240 171 / 4e-50 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G26360 169 / 2e-49 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT4G09900 166 / 5e-49 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT2G23600 159 / 3e-47 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23610 158 / 5e-47 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034253 [exp] 541 / 0 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10034252 [exp] 192 / 2e-62 AT3G10870 99 / 8e-27 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10013193 [exp] 174 / 1e-51 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 174 / 1e-51 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10003511 [exp] 162 / 2e-47 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10005298 [exp] 155 / 8e-45 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10022467 [exp] 152 / 9e-45 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 149 / 2e-43 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10005400 [exp] 145 / 4e-42 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061700 [exp] 350 / 4e-122 AT3G10870 356 / 1e-124 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.019G131100 [exp] 306 / 7e-105 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.013G158200 [exp] 288 / 7e-98 AT3G10870 296 / 4e-101 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.007G036700 [exp] 173 / 8e-53 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.017G096900 [exp] 175 / 3e-52 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.019G077400 [exp] 174 / 4e-52 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.004G116500 [exp] 174 / 5e-52 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.013G104700 [exp] 169 / 2e-50 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.009G107500 [exp] 167 / 3e-50 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.008G096900 [exp] 169 / 8e-50 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10029011 pacid=23151756 polypeptide=Lus10029011 locus=Lus10029011.g ID=Lus10029011.BGIv1.0 annot-version=v1.0 ATGGAAGCAGGACAAGCTGGTTCAGGACTTTCATCGAACACCTGGTCTGCGAAACCTCCGCCGGCCCATTTCGTGCTGGTCCACGGCGTCGGCGGCGGGA GCTGGTGCTGGTACAGAATCCGGACTCTGCTCGAGTCATCCGGCCACAAGGTCACGTGCGTCGACTTAGCCAGCGCCGGAATTGACCGGGTTGACCCGGA CACGCTGTTCGAATTCGAGGATTACAACCGGCCATTGATGGAGTTCATGGCGACGTTGCCGGAAACAGAGCAGGTAATACTGGTGGGACATAGCGCCGGT GGGTTGAGCTTGACGTCGGTGAGCCACAAGTTCCCAAAGAAGATTCGGGTGGCCGTCTACCTGGCCGCCACCATGCTCAAGCTTGGGTTCTGCACCCACC AAGACTTCCTCGATGGAGTCCCGGACCTATCGAGATTCGGCGACAAGGTATACGACCTCCGGTTCGGTAAAGGAACCGACCAACCTCCGACCTCCGCCGT CATAGCTAAGCCCTTCATGCGCCAAGTTGCCTACAACACTAGCCCTCCTGAGGACGTCACCTTAGCCTCAATGCTTCTCAAGCCCGGCCCTGTCCAGGCC CTCCAATCAGCCCGATTCGACGGGCTATCAGCTTTATCGTCCGTGGACGAAGTTGAGAGGGTGTACATAAAAACAATGCAGGACAACGTGGTCAGGGTGG AGCAGCAGGATGCCATGATCCAACAATGGCCTCCGTCTCGTGTCTTTTCGTTGGATGCTGATCATAGCCCGTTCTTCTCGTCCCCTGTCTTGCTCTTCGG CCTCCTTCTCAACATCGCCGGTTCCAATGGTTGTTATCAGGAATCATAA
AA sequence Show only first row Show all	>Lus10029011 pacid=23151756 polypeptide=Lus10029011 locus=Lus10029011.g ID=Lus10029011.BGIv1.0 annot-version=v1.0 MEAGQAGSGLSSNTWSAKPPPAHFVLVHGVGGGSWCWYRIRTLLESSGHKVTCVDLASAGIDRVDPDTLFEFEDYNRPLMEFMATLPETEQVILVGHSAG GLSLTSVSHKFPKKIRVAVYLAATMLKLGFCTHQDFLDGVPDLSRFGDKVYDLRFGKGTDQPPTSAVIAKPFMRQVAYNTSPPEDVTLASMLLKPGPVQA LQSARFDGLSALSSVDEVERVYIKTMQDNVVRVEQQDAMIQQWPPSRVFSLDADHSPFFSSPVLLFGLLLNIAGSNGCYQES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10029011 [exp]	0	1
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	6.3	0.8499
AT2G31410			unknown protein		Lus10035165 [exp]	14.7	0.8174
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	15.7	0.8198
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	16.6	0.8245
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	17.2	0.8222
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	20.0	0.8012
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	48.9	0.8173
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	50.2	0.8157
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019880 [exp]	55.7	0.8052
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	57.2	0.7852

Compare expression of checked genes

Lus10029011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.