Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05190 61 / 5e-10 Protein of unknown function (DUF3133) (.1) AT3G61670 53 / 2e-07 Protein of unknown function (DUF3133) (.1) AT2G46380 50 / 2e-06 Protein of unknown function (DUF3133) (.1) AT3G56410 46 / 5e-05 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034250 [exp] 511 / 0 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10030508 [exp] 133 / 4e-34 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 119 / 3e-29 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 59 / 4e-09 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 57 / 2e-08 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 49 / 5e-06 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061400 [exp] 84 / 2e-17 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 62 / 3e-10 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 59 / 3e-09 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 52 / 6e-07 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029013 pacid=23151658 polypeptide=Lus10029013 locus=Lus10029013.g ID=Lus10029013.BGIv1.0 annot-version=v1.0 ATGGGTGAAGTAGCAGCGAAGATGATCCGGCTGGTACGGTGTCCGAAATGCAGGCAGGTTCTCCTCGAGCTTCCTGATGTTCTTGTTTATCAGTGTGGTG GCTGTGGGGCGTATCTCCAAGCGAAAATACGGGCACGTACCCCGTCTGCTTCAGAAGTGTCGGCTTCTTCTGTGGTTCATATTCCTGAGGTTGGTTCAAA TGATGATCCGAAATCCGAAGCTTGTGATCAAGAGCAGCAGGAAATTTCCAAGGTGGCTTCTTTGGCGAAGCAAGCCACCTTTCTTGAGAAGGAAGAAATG TCTGCAGTTGTTGGAGTGGCTTCACAAGCTGAATTTTATGGTGATATTGAAGTAGATGGGAAAAGTAAGGGTCTTTTCGACTCGAGAAGATCTAGCACTT CAGGAGATGTTCATAGAACCCGAGGAAGGCTTGATCGTCCCTTTAGAGGCCGAGGAAGGTTGGAAAAGGACGAACTTCTTCCTCAACCAAGGAGTTGTAT CAATGGTGGATATGGAAGTCACAACCCCTCATATCCATCGGAGAGGGGATCGCATTTCCATGCACGAACCGACACTGCAGAGATTGAGCAGCAGAAGATC AGATTATTGAGAATGGTTCAAGAGTTGCAAGACCAACTCACCAGATCGTGTTCCCTGAATAATACAGTTAGTGGAAGAAGGGTTTTGGCTGGAGGAGGTG CTAGTAAGGATCAACATGTTCCTAGATTTCGTGATGGCGAGGCCCTCGAGTATCCCAAATATCGCAGTGATCCCAGATCCCAGCAAATGCAGCATTCAAG GATGCCATTTTCTGCAGAGGCAACATACTGCAGGCATAACGTTCATCAGTGTTTCTGCTGCCAAACTCAATGCCATAATCACCACAGAGAATTCTGCAGG CCACATTATGGCCGGACCTTTTGCAGATCGTATGGCTCTTGTTCTTGTGCAAGTCCTCAAATACATACGAACAACTATTCCACGTATGGCCCCAATGACC AAAGGCATCGAGATGATCATGCTTTGAAGAATTATACACATCACTCGGTTAATAAGAGGATCTTCGCCCTGCAGAAGCAATAG
AA sequence Show only first row Show all	>Lus10029013 pacid=23151658 polypeptide=Lus10029013 locus=Lus10029013.g ID=Lus10029013.BGIv1.0 annot-version=v1.0 MGEVAAKMIRLVRCPKCRQVLLELPDVLVYQCGGCGAYLQAKIRARTPSASEVSASSVVHIPEVGSNDDPKSEACDQEQQEISKVASLAKQATFLEKEEM SAVVGVASQAEFYGDIEVDGKSKGLFDSRRSSTSGDVHRTRGRLDRPFRGRGRLEKDELLPQPRSCINGGYGSHNPSYPSERGSHFHARTDTAEIEQQKI RLLRMVQELQDQLTRSCSLNNTVSGRRVLAGGGASKDQHVPRFRDGEALEYPKYRSDPRSQQMQHSRMPFSAEATYCRHNVHQCFCCQTQCHNHHREFCR PHYGRTFCRSYGSCSCASPQIHTNNYSTYGPNDQRHRDDHALKNYTHHSVNKRIFALQKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	0	1
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10005813 [exp]	3.0	0.8563
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	3.2	0.8684
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	4.0	0.8588
					Lus10042751 [exp]	6.6	0.8540
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	7.3	0.8013
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	10.0	0.8503
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	13.0	0.8453
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	15.0	0.8100
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	19.9	0.7663
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	20.4	0.8042

Compare expression of checked genes

Lus10029013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.