Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40780 186 / 7e-61 Nucleic acid-binding, OB-fold-like protein (.1.2) AT2G04520 47 / 6e-07 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 46 / 1e-06 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G40910 45 / 8e-06 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034249 [exp] 313 / 3e-111 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10030510 [exp] 176 / 3e-57 AT2G40780 155 / 5e-49 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10002264 [exp] 44 / 1e-05 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000920 [exp] 42 / 3e-05 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10033806 [exp] 42 / 4e-05 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10014627 [exp] 42 / 4e-05 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10012866 [exp] 0 / 1 AT2G40780 51 / 3e-15 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061200 [exp] 222 / 7e-75 AT2G40780 187 / 2e-61 Nucleic acid-binding, OB-fold-like protein (.1.2) Potri.014G160900 [exp] 46 / 1e-06 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G219200 [exp] 44 / 8e-06 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 39 / 0.0004 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10029014 pacid=23151814 polypeptide=Lus10029014 locus=Lus10029014.g ID=Lus10029014.BGIv1.0 annot-version=v1.0 ATGAAGGGAGGAAGGAAGAATCTGAAGAGGGCATCGGGGGACGAACATGATCTGAAACTTGAAGATGGCCAAAGCATGATGCAAGTACTGTCCCTCCGAG GTTCCAACCTTATCGAGGTAATGGGCACAGATGGAGAGAAGTCTTTGGCTTTGTTTCCAGCTAAGTTTCAGAAGAGCATGTGGATAAAAAATGGGAGCTT TGTTATAGTCGACGAAAGTGGAAAGGAGAAGGCGATCGAGTCAGGCAGCAAGGTGACTTGCATTGTTTCTCAGGTTCTTTTCCATGAACAAGTCCGTAAG CTTCAGAAATCGCCCGAATGGCCAGAAATTTTCAAGTCTACAACTTTGGAAGATACCTCTCTACCGAAAGCCCCAAACCAAGAAGCAGACGAGCTCAATT CAAGTGATGATGAGTATGATGATGGGCTCCCACCATTAGTCGCCAACAAGAACAGGATCCGGCCACATGAAGTAGATTCTGAGTCCGATACAGGATCTGA TTCTGATTCTTGA
AA sequence Show only first row Show all	>Lus10029014 pacid=23151814 polypeptide=Lus10029014 locus=Lus10029014.g ID=Lus10029014.BGIv1.0 annot-version=v1.0 MKGGRKNLKRASGDEHDLKLEDGQSMMQVLSLRGSNLIEVMGTDGEKSLALFPAKFQKSMWIKNGSFVIVDESGKEKAIESGSKVTCIVSQVLFHEQVRK LQKSPEWPEIFKSTTLEDTSLPKAPNQEADELNSSDDEYDDGLPPLVANKNRIRPHEVDSESDTGSDSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	7.3	0.7316
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	8.1	0.7072
AT2G39170			unknown protein		Lus10040608 [exp]	8.6	0.7371
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	9.5	0.7242
					Lus10008962 [exp]	12.5	0.7009
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	13.6	0.7143
AT5G55640			unknown protein		Lus10043162 [exp]	14.3	0.7208
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	23.6	0.7302
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	24.9	0.7086
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	25.1	0.7286

Compare expression of checked genes

Lus10029014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.