Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05220 77 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034248 [exp] 241 / 7e-84 AT5G05220 85 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090200 [exp] 96 / 4e-26 AT5G05220 75 / 2e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029015 pacid=23151731 polypeptide=Lus10029015 locus=Lus10029015.g ID=Lus10029015.BGIv1.0 annot-version=v1.0 ATGGGAACTTTCTGCTTCGTTTCTTACCCTGCAGCTTCATCTCCAACCATCAACGCCTCTCTTCCCCCTTCAAGATCCAACCTTTATCCACCTGCAACTC AACTAATCCTCCCAACAAGAAGGAAATTGCATCTCAATTGTGCCAAGCTGAGCCCTCCAATGTCTCACTACCAAGATCATGAACAAGAGTGGATGGATGT GGAATTTGGGAAGCTGGTGAAGGAGAAGTGCAGAGAAAGGAAAGGAGTGGTGGAGCTGTTGGAATGCCTTGAGACTGAAGCAATCATGGGCGATGATGAA GGTAAAGATCCTACTGATTATAATCGCAGAGCACAGATCTTTGACAGAAGCTCCATAGTTTTCCAGTCTCTCAAGAACCAGCAAAACCAGCCATAA
AA sequence Show only first row Show all	>Lus10029015 pacid=23151731 polypeptide=Lus10029015 locus=Lus10029015.g ID=Lus10029015.BGIv1.0 annot-version=v1.0 MGTFCFVSYPAASSPTINASLPPSRSNLYPPATQLILPTRRKLHLNCAKLSPPMSHYQDHEQEWMDVEFGKLVKEKCRERKGVVELLECLETEAIMGDDE GKDPTDYNRRAQIFDRSSIVFQSLKNQQNQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05220			unknown protein		Lus10029015 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	4.2	0.7082
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	10.8	0.6839
					Lus10031183 [exp]	17.2	0.6816
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	18.4	0.6790
					Lus10021139 [exp]	21.2	0.6780
					Lus10021851 [exp]	25.1	0.6773
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	27.1	0.6773
					Lus10008791 [exp]	29.0	0.6773
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	29.3	0.6695
					Lus10012440 [exp]	30.7	0.6773

Compare expression of checked genes

Lus10029015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.