Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 132 / 7e-37 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 71 / 2e-14 F-box family protein (.1.2) AT4G18720 58 / 4e-10 Transcription factor IIS protein (.1) AT5G42325 49 / 3e-07 Transcription factor IIS protein (.1) AT5G25520 46 / 9e-06 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 43 / 6e-05 SPOC domain / Transcription elongation factor S-II protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034247 [exp] 187 / 6e-59 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025131 [exp] 142 / 5e-41 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 142 / 7e-41 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 134 / 9e-38 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 134 / 1e-37 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10008108 [exp] 46 / 9e-06 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 44 / 3e-05 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109300 [exp] 130 / 1e-36 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.016G138100 [exp] 130 / 1e-36 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.018G034500 [exp] 44 / 4e-05 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.006G246800 [exp] 44 / 5e-05 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain
Representative CDS sequence Show only first row Show all	>Lus10029016 pacid=23151718 polypeptide=Lus10029016 locus=Lus10029016.g ID=Lus10029016.BGIv1.0 annot-version=v1.0 ATGAACGACGAGCGAGACGAGATTTACGTGGTATCCCCAACGAGAATCATGGGGACTAGTCCACGGCACAACGGCAGAATTTTATTATTCCTCAAAATGT TAACCCTACAAGTCGACCTTCATTCTCCTATTCATACCCAAATCACAAAGGTAAATTACAAAAGACACCCCATATTTCTAACAACAAAATCCGGGAACAG CTCTGTGAGGCCCTATCCAGGGTCTCGAGTGAAGACGACCGGGCGAATGGTCATGACCTGGTTCGAGTTGCGGTCGAGGTCGAGTCGGGATGTCCCGGAG TGGGGTTCGTCCATGGGGGACCACAAGGCGAAGTACAGGTCAATCATGTTCAACATCAAGGACGGGAAGAATCCCGACTTCAGGAGGAAAGTTCTGCTCG GGCAGTTCAAGCCCGAGAAGATTGTTATGTTTTGTTCGATGGACATGGCGAGCGACGAGAGGCAGCAGGAGAACGAGAAGATCAAGGCAAAAAAGCTGCT CGATTGCGAACTCAGTGGGGCCCCGAAGGCCACGACGGATCAGTTCAAGTGTAGTAGGTGTGGGCAGAGGAAGACTACTTACTACCAGAAGTGCCGATGA
AA sequence Show only first row Show all	>Lus10029016 pacid=23151718 polypeptide=Lus10029016 locus=Lus10029016.g ID=Lus10029016.BGIv1.0 annot-version=v1.0 MNDERDEIYVVSPTRIMGTSPRHNGRILLFLKMLTLQVDLHSPIHTQITKVNYKRHPIFLTTKSGNSSVRPYPGSRVKTTGRMVMTWFELRSRSSRDVPE WGSSMGDHKAKYRSIMFNIKDGKNPDFRRKVLLGQFKPEKIVMFCSMDMASDERQQENEKIKAKKLLDCELSGAPKATTDQFKCSRCGQRKTTYYQKCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	0	1
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	4.4	0.9885
AT3G14880			unknown protein		Lus10013711 [exp]	6.6	0.9882
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	8.5	0.9855
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	9.8	0.9855
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	10.5	0.9743
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	10.8	0.9268
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	11.0	0.9855
					Lus10009618 [exp]	12.0	0.9855
AT3G46140			Protein kinase superfamily pro...		Lus10039141 [exp]	12.6	0.8974
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	12.8	0.9276

Compare expression of checked genes

Lus10029016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.