Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46140 60 / 4e-11 Protein kinase superfamily protein (.1) AT3G50310 59 / 6e-11 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G45790 57 / 3e-10 Protein kinase superfamily protein (.1) AT5G55090 56 / 9e-10 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT3G45670 55 / 2e-09 Protein kinase superfamily protein (.1) AT5G67080 55 / 2e-09 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT2G32510 51 / 3e-08 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 51 / 4e-08 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT4G36950 50 / 6e-08 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT4G26890 50 / 9e-08 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034242 [exp] 220 / 9e-73 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 137 / 2e-40 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 130 / 1e-37 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029024 [exp] 117 / 3e-34 ND 35 / 0.008 Lus10026894 [exp] 119 / 1e-33 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10031339 [exp] 94 / 4e-25 AT4G36950 100 / 3e-26 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10039141 [exp] 92 / 4e-23 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10034216 [exp] 82 / 3e-20 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1) Lus10034246 [exp] 75 / 3e-17 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184200 [exp] 70 / 9e-15 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 70 / 1e-14 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 62 / 8e-12 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 57 / 3e-10 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G131100 [exp] 53 / 7e-09 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139200 [exp] 52 / 1e-08 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 50 / 6e-08 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G278600 [exp] 49 / 3e-07 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.005G139300 [exp] 48 / 4e-07 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.014G155000 [exp] 46 / 2e-06 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029018 pacid=23151727 polypeptide=Lus10029018 locus=Lus10029018.g ID=Lus10029018.BGIv1.0 annot-version=v1.0 ATGGCGACTGTGGGTTGGACACGAGGCAAGCGACTGGGAAGGGGAGCATCCGGAGAGGTGTTCGTCGCCAAACCCAACAACCCGAATCTTCCGTTGATGG CTGTGAAGTCAGCGCCGGCGGACAAAGCCTCCTCCCTCCTCTTGGAGTTCGACATTCTGTCCAAGTTCCGGAACGTTCCGGGGATCATCCAGTGTATCAG AGAAGATGTCTCTTACGACCAATTACCAAGCGGCGAGATGATGACTTACAATCTCTTTCTGGAGTACGCCGCCGGCGGGTCACTCTCCGATATGATTGCG GACTACAGAGGAAGCGGCGGCGGAGTTGGAAAGCCGGAGAAGTTTGTCACTATTGGAAGCGCTATACTCCGTCCACTCAGCCGGCTATACTCACTGCGAT GTCAAGCCGGAAAACGTGCTTGTCTTTACGGATTCCGACGATGA
AA sequence Show only first row Show all	>Lus10029018 pacid=23151727 polypeptide=Lus10029018 locus=Lus10029018.g ID=Lus10029018.BGIv1.0 annot-version=v1.0 MATVGWTRGKRLGRGASGEVFVAKPNNPNLPLMAVKSAPADKASSLLLEFDILSKFRNVPGIIQCIREDVSYDQLPSGEMMTYNLFLEYAAGGSLSDMIA DYRGSGGGVGKPEKFVTIGSAILRPLSRLYSLRCQAGKRACLYGFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46140			Protein kinase superfamily pro...		Lus10029018 [exp]	0	1
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	1.0	0.9569
					Lus10013654 [exp]	4.7	0.9532
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	10.4	0.9460
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	11.5	0.9451
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	14.7	0.9005
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	14.8	0.9413
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	15.1	0.9388
					Lus10002418 [exp]	15.3	0.9219
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	16.4	0.8601
					Lus10015828 [exp]	17.1	0.9341

Compare expression of checked genes

Lus10029018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.