Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 94 / 1e-23 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G46140 92 / 1e-22 Protein kinase superfamily protein (.1) AT5G67080 91 / 1e-22 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G54960 89 / 2e-21 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 89 / 3e-21 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT4G36950 87 / 7e-21 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G46160 87 / 1e-20 Protein kinase superfamily protein (.1) AT5G55090 86 / 1e-20 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT3G06030 86 / 2e-20 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G63700 85 / 6e-20 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029023 [exp] 261 / 3e-90 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 234 / 2e-78 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 193 / 1e-62 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 177 / 4e-57 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10034285 [exp] 167 / 5e-52 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 160 / 1e-49 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029047 [exp] 149 / 7e-47 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 130 / 9e-38 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10011778 [exp] 125 / 4e-37 AT3G50310 96 / 2e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033400 [exp] 91 / 5e-22 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.007G044800 [exp] 88 / 2e-21 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.013G022700 [exp] 88 / 4e-21 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G139300 [exp] 87 / 6e-21 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G131100 [exp] 86 / 8e-21 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.008G149500 [exp] 87 / 9e-21 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.001G102900 [exp] 87 / 1e-20 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G184200 [exp] 86 / 2e-20 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.010G092000 [exp] 86 / 3e-20 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.001G042400 [exp] 84 / 8e-20 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029019 pacid=23151686 polypeptide=Lus10029019 locus=Lus10029019.g ID=Lus10029019.BGIv1.0 annot-version=v1.0 ATGGAGACTCCGAAGGATCCGGAGAGCAGGAATTTCAGGGGGACGGCGAGGTACTTGCCGCCGGAGGTCATCATGTCCGGGAAGGTGTCGCCGGCGATGG ACATCTGGGCGTTAGGGTGTACGGTGGTGGAGATGCTGACAGGAAAGCGGCCGTTCTCAGAGTTGAAGGAGAATCCTCAAGTGATGTGGAGAATCGCCAA CGGAAGTCAGCCGGAGATTCCTAATTGGCTGTCGGAAGAAGGCAAAGATTTCTTGAGCAAGTGTTTTGTGCAGAGCTCAGAGTTCCGATCTCCGGCGTGT ATGTTGCTCTCACATCCTTTCGTAACCGGACGGAGTTTGGAGGAGCAGCAGCAGCAGTTCCAGAAGCAGGAACTGCATCAGATATTTGAACAAGCCTTGG CTGATCTGCAATGTCAGATTTCTGGATAA
AA sequence Show only first row Show all	>Lus10029019 pacid=23151686 polypeptide=Lus10029019 locus=Lus10029019.g ID=Lus10029019.BGIv1.0 annot-version=v1.0 METPKDPESRNFRGTARYLPPEVIMSGKVSPAMDIWALGCTVVEMLTGKRPFSELKENPQVMWRIANGSQPEIPNWLSEEGKDFLSKCFVQSSEFRSPAC MLLSHPFVTGRSLEEQQQQFQKQELHQIFEQALADLQCQISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029023 [exp]	1.0	0.7727
					Lus10009425 [exp]	8.5	0.7020
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	12.4	0.7508
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10038261 [exp]	16.0	0.7056
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	19.9	0.6472
AT5G50220			F-box family protein (.1)		Lus10015170 [exp]	26.0	0.6822
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	26.6	0.6854
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	32.9	0.6640
AT3G15280			unknown protein		Lus10009211 [exp]	38.0	0.5140
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10007355 [exp]	40.7	0.6533

Compare expression of checked genes

Lus10029019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.