Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40760 535 / 0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G09280 117 / 4e-28 unknown protein AT1G17850 100 / 9e-23 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034243 [exp] 342 / 1e-115 AT2G40760 262 / 4e-84 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041981 [exp] 102 / 3e-23 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10008045 [exp] 100 / 1e-22 AT1G09280 748 / 0.0 unknown protein Lus10017986 [exp] 98 / 6e-22 AT1G17850 496 / 7e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059400 [exp] 577 / 0 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G011300 [exp] 114 / 5e-27 AT1G09280 773 / 0.0 unknown protein Potri.015G029600 [exp] 103 / 7e-24 AT1G17850 528 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10029020 pacid=23151815 polypeptide=Lus10029020 locus=Lus10029020.g ID=Lus10029020.BGIv1.0 annot-version=v1.0 ATGTTAAGGTTTAGGGCGCCACTAGTGTTCTTCCTCAGAATGTTCCCGCCGCCGCCGTCTCTGAACCCTAATACTAATTCTCCCATTTCCCTCCTCAAAT TGAACTCCATTTCCATCCCACATTCCAATTCTCCTCACCGCCGTCAACCCAGCACTTCCACCTCCAATTATCACACCTCCCAATCTCAAGCCATGACGAT CTCAAACTGCATCCCTGCCGCCATCTCCGCCGCACCGGGATCCGACAACCCAACCCCGAATTCCACTCTCACGGTCGTCTCTTTCTACTGCTTCGCCGAT TTCCCTGACCACGCCGATCTGCGGAAGCCATTGAAGGACCTCTGCGAGGAACTGCGGGTTTCAGGGGGAATCATTCTAGCACCAGAGGGAATCAACGGGA GCATATGTGGGACTAGGGATTCGGTTGAGAAAATTCTTGCATTTATTGGGAGTGATTCCCGGTTGAACAAGCTAAGGAAGATTGAGTCACCTGTCAGTCC AGAGGAGGAAGCTATCCATCACGGTCACTCAAGTAGCTCTCCCCTCTCTGCAGGGGAAGATGCTCCGTTTCGCTGGGATCATGTCCGAATTGTTACTCTT GGAATGCCGACTGTATCGCCCATTGAGAGAGTTGGGAAGTATGTGAAGCCTAGAGAATGGAACTCTTTGATTAGCGATCCAGATACAGTGGTGATTGATG TGAGGAACAATTATGAAATACGAATCGGGAAGTTCAAAGGAGCAGTTGATCCATGTACCTCAGCATTCCGGGACTTCCCGTCTTGGGTGGATGGTAATTT AGAACTTGCGGAAGCAGACAATGTGAATCAATCATCAGATCATGTCAGCCCTACCGGGAGTCTGAATAGTGGTAAAAAGCCACCGCGAGTTGCAATGTAC TGCACAGGGGGGATTCGATGTGAGAAAGCTTCGAGTTTCCTCCTACGCAAAGGTTTCGAAGAGGTTTATCATTTGGAAGGAGGGATCTTGAAGTACCTCG AGGAGGTTCCGGAATCGGAGAGCCTATGGGAGGGTGAATGTTTTGTTTTCGACAAGCGAGTGTCTGTGGAGCATGGTTTGGCACAAGGGACGTTTAAGCT ATGCTACGGATGTAAGCAACCGGTGAGCGATGCTGACATGGAAGCGCCAGAATGGGAGTATGGGGTTTCTTGCCCTTACTGTTACTCGTCCAAATCTGAA GAAGAGAAAGAGAGAGCTCGAGCTCGACAAAAACAGTTTGAAGCTTGGGGCGTTATCGGAGGTCCAGATAAAGGTAGACGACCCAACAAGCTTTCTACTC AAATTTAG
AA sequence Show only first row Show all	>Lus10029020 pacid=23151815 polypeptide=Lus10029020 locus=Lus10029020.g ID=Lus10029020.BGIv1.0 annot-version=v1.0 MLRFRAPLVFFLRMFPPPPSLNPNTNSPISLLKLNSISIPHSNSPHRRQPSTSTSNYHTSQSQAMTISNCIPAAISAAPGSDNPTPNSTLTVVSFYCFAD FPDHADLRKPLKDLCEELRVSGGIILAPEGINGSICGTRDSVEKILAFIGSDSRLNKLRKIESPVSPEEEAIHHGHSSSSPLSAGEDAPFRWDHVRIVTL GMPTVSPIERVGKYVKPREWNSLISDPDTVVIDVRNNYEIRIGKFKGAVDPCTSAFRDFPSWVDGNLELAEADNVNQSSDHVSPTGSLNSGKKPPRVAMY CTGGIRCEKASSFLLRKGFEEVYHLEGGILKYLEEVPESESLWEGECFVFDKRVSVEHGLAQGTFKLCYGCKQPVSDADMEAPEWEYGVSCPYCYSSKSE EEKERARARQKQFEAWGVIGGPDKGRRPNKLSTQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	2.4	0.8046
AT5G02710			unknown protein		Lus10003988 [exp]	5.5	0.8201
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	8.2	0.7588
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	9.8	0.7482
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	9.9	0.7398
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	11.1	0.7737
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	13.6	0.7104
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	16.6	0.7390
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	23.3	0.7563
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	36.9	0.7457

Compare expression of checked genes

Lus10029020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.