Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 149 / 6e-43 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 132 / 3e-36 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT5G24110 96 / 6e-23 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT5G01900 94 / 2e-22 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT2G46400 94 / 2e-22 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT1G66600 87 / 6e-20 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT4G11070 84 / 8e-19 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 84 / 2e-18 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT1G66560 79 / 4e-17 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT1G66550 78 / 9e-17 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034244 [exp] 537 / 0 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 252 / 7e-83 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10012870 [exp] 229 / 8e-74 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 122 / 3e-32 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10014177 [exp] 117 / 1e-30 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 117 / 1e-30 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10025133 [exp] 113 / 3e-29 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 97 / 4e-23 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10032372 [exp] 93 / 2e-21 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090300 [exp] 182 / 2e-55 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 140 / 3e-39 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 135 / 1e-37 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.003G138600 [exp] 105 / 5e-26 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 103 / 4e-25 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 100 / 4e-24 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.001G092900 [exp] 100 / 5e-24 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 98 / 4e-23 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.013G090400 [exp] 73 / 1e-14 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 72 / 3e-14 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10029021 pacid=23151674 polypeptide=Lus10029021 locus=Lus10029021.g ID=Lus10029021.BGIv1.0 annot-version=v1.0 ATGGGGAGTACTCCTTTTCTTCAAACTATGCAGAGGAAGCAGCAGCAGGAAGTGATCAAGGAGCTTGTTCAAGGCCAGAAATTCGCAGCTCAGCTTCAGC TTCTGCTCCCGAAGAACGATGTCCAGTCCTCTGCAGATGAACTTGTTGTCAAGATCTTGACATCTTTCACTCATGCTATCTCTGCTCTTTCCGCCGATTC CCGCGACAATCAAGACGACTCCTCTGCTTCCGGCCTGTACGAGGATTCCGGCGAGAGCCCGAAACGGCGGCCGTCGCCCTCTGGGAAAGACAATAGGGGG TCTTACAAGAGAAGGAAGAGTGGACAGTGCAACATAATAATCTCACCCACGATACAAGATGGGCAAGCTTGGAGAAAGTACGGGCAGAAGGAGATTCTTA ATGCGAAATTCCCTAGGAGCTACTTCAGGTGCTCTAGAAAGTACGAGCAAGGGTGCAAGGCGACGAAGCACGTCCAGAGGGTCGAGCAGGAATCGGCAGA GTTGTACTCCATCACTTACGTCGGACACCACACTTGCAGTGGGAACGTTCCGAGAACAATTCCATCGATATTCCCGGTTGAAACGGAGAACGAGACATCA GAGCTTTCCTTGATCAAGAATGTCAAGGAGGAGGGTTGCACGTTTGTGAACGAAGATCATGACATTGTGAATAATGAACATAGTATGAGTGGTGTGACAA ATGATCACAGTACGAATATGTGGCAGGATTTGGTGCCACTTGAGCCAGAGGAGGCCATTAGTAACCATGGTTATAATAGCTATTGTGGTTATGATGGTGG TGCCAGTTCTAGCTCCCAAATTTTGGATTTGGATTTTCTGGTTAAGAATGTCGATTTCGAGAACGGGTTTGGGTTTGATTGA
AA sequence Show only first row Show all	>Lus10029021 pacid=23151674 polypeptide=Lus10029021 locus=Lus10029021.g ID=Lus10029021.BGIv1.0 annot-version=v1.0 MGSTPFLQTMQRKQQQEVIKELVQGQKFAAQLQLLLPKNDVQSSADELVVKILTSFTHAISALSADSRDNQDDSSASGLYEDSGESPKRRPSPSGKDNRG SYKRRKSGQCNIIISPTIQDGQAWRKYGQKEILNAKFPRSYFRCSRKYEQGCKATKHVQRVEQESAELYSITYVGHHTCSGNVPRTIPSIFPVETENETS ELSLIKNVKEEGCTFVNEDHDIVNNEHSMSGVTNDHSTNMWQDLVPLEPEEAISNHGYNSYCGYDGGASSSSQILDLDFLVKNVDFENGFGFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	1.4	0.9416
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	1.4	0.9417
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	2.4	0.9339
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	3.2	0.9213
AT3G13130			unknown protein		Lus10012341 [exp]	5.5	0.9150
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	5.7	0.9298
AT1G75860			unknown protein		Lus10034539 [exp]	6.0	0.9031
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	6.0	0.8806
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	6.3	0.8986
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	7.2	0.8944

Compare expression of checked genes

Lus10029021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.