Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40740 151 / 3e-44 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT4G23810 99 / 5e-24 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT4G11070 95 / 5e-23 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT3G56400 93 / 5e-22 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT5G24110 92 / 8e-22 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G40750 89 / 3e-20 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT2G46400 87 / 7e-20 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT5G01900 81 / 4e-18 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66560 80 / 1e-17 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT1G66550 79 / 2e-17 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034245 [exp] 237 / 8e-78 AT2G40740 108 / 6e-28 WRKY DNA-binding protein 55 (.1.2) Lus10001062 [exp] 103 / 8e-26 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10032372 [exp] 102 / 3e-25 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 102 / 3e-25 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10039331 [exp] 101 / 9e-25 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001902 [exp] 97 / 2e-23 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 87 / 6e-20 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10014177 [exp] 84 / 1e-18 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 83 / 2e-18 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090400 [exp] 202 / 2e-63 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 142 / 4e-40 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.012G031700 [exp] 107 / 7e-27 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 106 / 1e-26 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.003G138600 [exp] 103 / 1e-25 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 100 / 1e-24 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 99 / 6e-24 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090300 [exp] 84 / 1e-18 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 84 / 1e-18 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 81 / 2e-17 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10029022 pacid=23151753 polypeptide=Lus10029022 locus=Lus10029022.g ID=Lus10029022.BGIv1.0 annot-version=v1.0 ATGGACCAAACACTTGCTCTGCTCTTGCACGCCTGCAACCTAGCCCGACACCTCGAATCCAACCTCCTCCCTCACATCAACAACTCCGAAGCGCTCTCGA AATCCTGCGACGAAATCATCGCCGTTTTCCTCGCTTGCAAGGAAAGACTCTCACTTTCCGGAAACCCACAACAGGGTGGCTTGTCCGGACAGCCGCCGTG GCTGATGAAGTGTAGTAGTAGCAACCCATCAGCAATGACGACGATGGAGATGTTCCAAGCAGCTGATCATGATCAAGTGGCTAATACTACTGCTTCAATG GGAATGACGACGATGGAAGTTGCGCCGGGAGCCCCCTCTTCATCGTCCGGAGGGGTGAGATTTGGCGGCGGCGGAGCGGCGGGGAAGAACGAAGCAGATA GAAAAACAATAAGAGTACCTGTTCCACGGGTTGGGAACACAGAAATTCCACCGGAAGATGGATTCACATGGAGAAAATATGGGCAGAAGGAGATTCTTGG TTCTAGATTTCCAAGGGGTTACTTCAGGTGCACCCATCAGAAGTTGTACAACTGCAGAGCCAAGAAGCAAGTCCAACGGCTAGACCACGACCCGGACACC TACGAAGTCACCTACAGAGGCCGCCACACCTGCCACATGTCCACCACCGCACCATCCGTTGGACCGGCGCCGGAGGAACCCCACACCGGTCCCTCCGTCA CGTCAGCATTGCAGCAGGTCATAACCGCGGCTGCTCAGCAGCAGCAATCGAAGGCCAGCTGGGCGGTGTGA
AA sequence Show only first row Show all	>Lus10029022 pacid=23151753 polypeptide=Lus10029022 locus=Lus10029022.g ID=Lus10029022.BGIv1.0 annot-version=v1.0 MDQTLALLLHACNLARHLESNLLPHINNSEALSKSCDEIIAVFLACKERLSLSGNPQQGGLSGQPPWLMKCSSSNPSAMTTMEMFQAADHDQVANTTASM GMTTMEVAPGAPSSSSGGVRFGGGGAAGKNEADRKTIRVPVPRVGNTEIPPEDGFTWRKYGQKEILGSRFPRGYFRCTHQKLYNCRAKKQVQRLDHDPDT YEVTYRGRHTCHMSTTAPSVGPAPEEPHTGPSVTSALQQVITAAAQQQQSKASWAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10029022 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	8.1	0.7606
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10007770 [exp]	9.2	0.6936
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10042914 [exp]	14.0	0.7509
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	17.3	0.7346
AT4G39420			unknown protein		Lus10008760 [exp]	18.1	0.7331
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	23.3	0.7234
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	28.6	0.7184
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	31.6	0.7145
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	34.3	0.7124
					Lus10006918 [exp]	36.4	0.7124

Compare expression of checked genes

Lus10029022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.