Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 145 / 3e-42 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 131 / 7e-37 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 130 / 2e-36 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G46140 123 / 2e-33 Protein kinase superfamily protein (.1) AT5G27510 119 / 1e-32 Protein kinase superfamily protein (.1) AT5G55090 119 / 2e-31 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G42550 116 / 4e-31 Protein kinase superfamily protein (.1) AT3G45790 116 / 5e-31 Protein kinase superfamily protein (.1) AT4G26890 115 / 3e-30 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G41930 114 / 3e-30 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034242 [exp] 370 / 1e-130 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 300 / 2e-104 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10026894 [exp] 292 / 2e-100 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 260 / 7e-90 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 243 / 1e-80 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 238 / 1e-78 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 191 / 3e-60 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10017114 [exp] 183 / 2e-57 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029047 [exp] 146 / 1e-44 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042400 [exp] 143 / 6e-41 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 139 / 2e-39 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.009G131100 [exp] 132 / 1e-37 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.007G044800 [exp] 132 / 6e-37 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 127 / 2e-35 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 125 / 1e-34 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.005G139200 [exp] 123 / 9e-34 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G171500 [exp] 115 / 3e-31 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G033400 [exp] 115 / 9e-30 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 113 / 6e-29 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029023 pacid=23151667 polypeptide=Lus10029023 locus=Lus10029023.g ID=Lus10029023.BGIv1.0 annot-version=v1.0 ATGATTGCGGACTACAGAGGAAGCGGCGGCGGAGTTGGAATGCCGGAGAAGTTTGTCAAGATCAGCACTTTAGCACTATTGGAAGCGCTATACTCCGTCC ACTCAGCCGGCTATACTCACTGCGATGTCAAGCCGGAAAACGTCCTTGTCTTTACGGATTCCGACGATGAGGGACTCTGCCATCTGAAGATCGCGGATTT CGGCCTGGCGATGGAGACTCCGAAGGATCCGGAGAGCAGGAATTTCAGGGGGACGGCGAGGTACTTGCAGCCGGAGGTCATCATGTCCGGGAAGGTGTCG CCGGCGATGGACATCTGGGCGTTAGGGTGTACGGTGGTGGAGATGCTGACAGGAAAGCGGCCGTTCTCAGAGTTGAAGGAGAATCCTCAAGTGATGTGGA GAATCGCCAACGGAAGTCAGCCGGAGATTCCTAATTGGCTGTCGGAAGAAGGCAAAGATTTCTTGAGCAAGTGTTTTGTGCAGAGCTCAGAGTTCCGATC TCCGGCGTGTATGTTGCTCTCACATCCTTTCGTAACCGGACGGAGTTTGGAGGAGCAGCAGCAGCAGTTCCAGAAGCAGGAACTGCATCAGATATTTGAA CAAGCCTTGGCTGATCTGCAATGTCAGATTTCTGGATAA
AA sequence Show only first row Show all	>Lus10029023 pacid=23151667 polypeptide=Lus10029023 locus=Lus10029023.g ID=Lus10029023.BGIv1.0 annot-version=v1.0 MIADYRGSGGGVGMPEKFVKISTLALLEALYSVHSAGYTHCDVKPENVLVFTDSDDEGLCHLKIADFGLAMETPKDPESRNFRGTARYLQPEVIMSGKVS PAMDIWALGCTVVEMLTGKRPFSELKENPQVMWRIANGSQPEIPNWLSEEGKDFLSKCFVQSSEFRSPACMLLSHPFVTGRSLEEQQQQFQKQELHQIFE QALADLQCQISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029023 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	1.0	0.7727
					Lus10009425 [exp]	5.8	0.7042
					Lus10043183 [exp]	29.1	0.5649
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Lus10017525 [exp]	31.9	0.6206
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10030206 [exp]	33.9	0.5258
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	36.2	0.5786
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	40.5	0.5708
AT4G05230			Ubiquitin-like superfamily pro...		Lus10018369 [exp]	46.7	0.5648
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	51.7	0.5611
					Lus10005269 [exp]	66.9	0.5032

Compare expression of checked genes

Lus10029023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.